Shewanella violacea: SVI_4186
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Entry
SVI_4186 CDS
T01206
Symbol
ybbB
Name
(GenBank) ybbB protein
KO
K06917
tRNA 2-selenouridine synthase [EC:
2.9.1.3
]
Organism
svo
Shewanella violacea
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svo03016
]
SVI_4186 (ybbB)
Enzymes [BR:
svo01000
]
2. Transferases
2.9 Transferring selenium-containing groups
2.9.1 Selenotransferases
2.9.1.3 tRNA 2-selenouridine synthase
SVI_4186 (ybbB)
Transfer RNA biogenesis [BR:
svo03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
SVI_4186 (ybbB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhodanese
DUF3088
Dna2
BBS7_hp
KAP_NTPase
DUF1378
Motif
Other DBs
NCBI-ProteinID:
BAJ04157
UniProt:
D4ZE96
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All DBs
Position
4790264..4791331
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AA seq
355 aa
AA seq
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MLSGHPIMDVRAPLEFDKGAFLSSTNLPLMQDSERQKVGTCYKKKGQEAAIELGHTLVKG
KVKQQRVDAWLDYFEKNPNAYLYCFRGGLRSQLTQEWLKEAGLEVPYIEGGYKAMRQYLI
EVIDEAPQQQPVLILSGITGSGKTDFLIKRSESVDLEGIAHHRGSSFGRYHEPQPTQINF
ENRLAVELLRHQQRNERCLVLEDESFLIGRSAIPKTFYSAMQTAQVLVLEESNENRHSRL
LDEYVHKMHSGYIERLGEEAGFIAFSEYLSLSITGIKKRLGGQLHDEFQSIITNALKIQQ
QRNTTEAHLEWISMLLTRYYDPMYQYQLDKKQARVLFKGSHQAMHEWLDDYSAPT
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgttatcgggtcatcctattatggatgtcagggcccccctcgaatttgataagggtgcg
ttcctgagcagtactaacctgccgctcatgcaagatagtgaacgacagaaggtaggtact
tgttataagaaaaaaggccaagaagctgccattgaactcgggcacactctggttaaaggc
aaagttaagcagcaaagggtggatgcctggctggattattttgagaagaatccaaatgca
tacctgtattgctttagaggtggtctaagatctcaactcactcaagaatggcttaaagaa
gcaggcttggaagtcccctatattgaggggggttataaggctatgcgccagtatctcatc
gaagtcatcgatgaagctccccagcaacagcctgtactcattctcagtgggatcaccggc
agtggtaaaactgacttcttgatcaaacgttctgagtccgttgacctggaaggcattgcc
catcacaggggatcgagtttcggacgttaccatgaacctcaaccgacacagatcaatttt
gaaaatcgtctagcagtggaattattaaggcatcagcagagaaatgaacgctgtttagtc
ttagaagatgaaagcttcctcatcggccgatctgcgatacctaagacattttacagcgcc
atgcaaacggctcaggtcttagtgttagaggaatctaatgaaaatcgacatagcagatta
ttggatgaatacgttcataagatgcattccggctacatagagcgtctaggtgaagaggct
ggctttatcgcattttcagagtacttaagcctaagtattacgggaattaagaaacgactc
ggtggtcagctacatgatgagtttcagtctatcattaccaatgccctgaaaattcaacag
caaaggaacactacagaggctcacctagagtggatatctatgctgctcaccaggtactac
gatcctatgtatcagtatcaactggacaagaaacaggctcgagtcttatttaagggctct
catcaggctatgcatgaatggttagatgattattctgctcccacataa
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