Shewanella violacea: SVI_4289
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Entry
SVI_4289 CDS
T01206
Name
(GenBank) long-chain-fatty-acid--CoA ligase, putative
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
svo
Shewanella violacea
Pathway
svo00061
Fatty acid biosynthesis
svo00071
Fatty acid degradation
svo01100
Metabolic pathways
svo01212
Fatty acid metabolism
svo02024
Quorum sensing
svo04146
Peroxisome
Module
svo_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SVI_4289
00071 Fatty acid degradation
SVI_4289
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SVI_4289
09145 Cellular community - prokaryotes
02024 Quorum sensing
SVI_4289
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
svo01004
]
SVI_4289
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svo04147
]
SVI_4289
Enzymes [BR:
svo01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SVI_4289
Lipid biosynthesis proteins [BR:
svo01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SVI_4289
Exosome [BR:
svo04147
]
Exosomal proteins
Exosomal proteins of breast milk
SVI_4289
Exosomal proteins of breast cancer cells
SVI_4289
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
BAJ04260
UniProt:
D4ZF96
LinkDB
All DBs
Position
complement(4889297..4891093)
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AA seq
598 aa
AA seq
DB search
MSLEQYHLTRLIKQQSLQLGDAIALEGYEMAAPWYQVSWRNFDSISTRVAQALIHFGFEA
QDRVVILAQNSPQWTCADIGSLKTRAVVVPIYPTSTFGQASYIVDDAEAKLIFAGDQTHY
EMACKLTQVCNSLVQVVVFDKSVTLEDNENHHYFDDLIADTYPEKTLIELDKRLEAANLD
DLLTLIYTSGTTGDPKGVMLDYRNIASMVRQHDNFLPFTPGDVSLAFLPLSHVFERGWSF
YVLCRGGHNVYLNNPMAVKEAIVQVRPHTLCVVPRFLEKVYSAVQDTVSKAPSSRQKLFA
WAMNLGHRQSEVGQGREKASFCLSLQWKLADKLVFSKLKQVLGGRLKFMPVGGAALDPTV
SAFFQSIDVPVLCGYGMTETTATATCNTLANRVPGSNGKVIPEVEIKLGKDNEILVRGDT
VMRGYYNRPQETADTFEDGWLKTGDAGRIDEQGNLFITDRIKELMKTSNGKYIAPQRVEG
KLACCPFIEQVAIVADAKNYVTALIVPAFQPLETWAKEQGLHYDSPMDLLRHSQVIEHYE
QRLKILQSDLAGFEKIKKFTLLPEAFSMEAGLITPTMKLRRKVIYHKYASEISAMYGR
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcactcgagcagtatcatttaacacgtttaatcaagcagcagagcctgcaactcggc
gatgctattgcactcgaaggatatgaaatggcggccccatggtatcaggtgagctggaga
aatttcgatagcattagcactcgggtagcccaagccttgattcactttggcttcgaggct
caagatcgcgtggtcatacttgcccagaacagccctcagtggacctgtgccgatattggc
agccttaagactcgcgccgttgtggtacctatctatccgacaagtacctttggccaggcc
agttatattgtcgatgatgccgaggcgaaacttatattcgctggcgatcaaactcattat
gagatggcctgtaaactgacccaagtctgtaacagcctagtacaggttgtggtgttcgat
aagagtgtcaccctagaagacaatgaaaaccatcattacttcgatgaccttattgctgat
acttatccggaaaagacgcttatagagttggacaagcgactggaggcggccaacttagac
gatctgcttacgctgatctatacctctggaacgacaggtgatccaaaaggcgtgatgttg
gattatcgcaatatcgcctctatggtgcgtcagcacgataacttcctgccatttactccc
ggtgatgtgtctctggccttcctgcctttgagccatgtgtttgagcgcggttggagcttc
tatgtactttgtcgtggcggccataacgtctatctgaataaccctatggcagtaaaagaa
gccatagtccaagtgcgtccacacacgctttgtgtggtaccaagatttttagagaaggtg
tatagcgcggttcaggatacagtctctaaggcgccgagtagccgtcagaagctgtttgca
tgggccatgaatctgggtcataggcaatctgaagtgggtcagggccgtgagaaggcatca
ttttgtttgagcctacaatggaaattggccgataaactagtgtttagcaagcttaagcag
gtattgggcggacgtctcaagtttatgcctgtaggtggagcggcactggatcctaccgta
agcgctttcttccagagcatcgacgtacctgtgttgtgtggttatggcatgacagaaacg
acggcgacagccacctgtaataccttagctaatcgcgtgcctggttctaacggcaaggtc
atacctgaggtcgagataaaactaggtaaagataacgagattttagtgcgcggcgatact
gtgatgcgtggttattataatcgccctcaagaaactgccgataccttcgaagatggctgg
ttgaagaccggcgatgcaggccgtatagatgagcaaggcaacctgtttatcaccgaccgc
attaaggagttgatgaagacctcgaacggtaagtatatcgctcctcagcgcgtcgaaggt
aagttggcttgttgtcctttcatcgagcaagtagccatagtggccgatgctaagaactat
gtcaccgccttgatcgtgccagcctttcagccgttagagacttgggctaaagagcaaggg
ctgcattatgattcgcccatggatctgttacgtcacagccaagttattgagcattatgag
caacgcctcaagatactgcagagcgatctagccggcttcgagaagattaagaagtttact
ctattgccggaagccttttctatggaagcgggtcttatcacgccgaccatgaagttacgt
cgtaaggtgatttatcataagtatgccagtgaaatcagtgccatgtatggtcgataa
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