Stratiformator vulcanicus: Pan189_23860
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Entry
Pan189_23860 CDS
T09804
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
svp
Stratiformator vulcanicus
Pathway
svp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan189_23860 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svp03019
]
Pan189_23860 (cshA)
03009 Ribosome biogenesis [BR:
svp03009
]
Pan189_23860 (cshA)
Enzymes [BR:
svp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pan189_23860 (cshA)
Messenger RNA biogenesis [BR:
svp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pan189_23860 (cshA)
Ribosome biogenesis [BR:
svp03009
]
Prokaryotic type
rRNA helicases
Pan189_23860 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Pox_LP_H2
Motif
Other DBs
NCBI-ProteinID:
QDT38002
UniProt:
A0A517R2A2
LinkDB
All DBs
Position
complement(2947856..2949118)
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AA seq
420 aa
AA seq
DB search
MSDHPKTPVSADAPITFEELGLGPDSLKTLEKIGFETPSKIQAAFIPIALTGRDCSGQAR
TGTGKTAAFALPMLERLDLSKKGVHGIVLSPTRELSEQIANEFERLSDDRCKAACIVGGR
SMDRQVKALKAGAQVVIGTPGRVIDLIGRGQLDLSKVEVAVLDEADRMLDIGFRPDIEKI
LRKCPSDRQTLLLSATMPNEVEGLAAKFMKNPERIDMSEDALVSTEMIEQFIITVDHDRK
FDTLTRVLLQERPKQVIVFTRTKRGADTLGAKFMRKLKGVELIHGDLAQSKRDRVLREFR
AGSVRMLIATDVVGRGIDISGVSHIINYDIPEFCDDYVHRIGRTGRLSSASKGRAITFVC
RDQGDQLTNIEMRVNKLLEQYEVRGFEPVRAQKKAGHVDDKQSTEYSGVKSSKSSVYSHA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcaccccaagacgcccgtgtctgcggacgcccctattacctttgaagaactc
gggctcggccctgactctctgaaaacgctggaaaaaatcggttttgaaacccccagcaaa
attcaggcggcgtttattccgatcgccctgaccggacgcgactgcagcggccaagcacgc
acaggcaccggaaaaactgctgcgttcgcattaccgatgctcgaacgactggacctttcg
aaaaaaggcgtccacggcatcgtgctctcgccgacacgcgaactcagcgagcagatcgca
aacgaattcgaacgcctgtccgacgatcgctgtaaagcggcgtgcattgtcggcggccga
tcaatggaccgacaagtgaaagcactcaaggccggggcgcaggttgtgatcgggacacca
ggccgcgttattgatttaattggccgcggacaactcgacctgtcgaaagtcgaagtcgcc
gtgctcgacgaagcggatcgaatgctcgatatcgggttccgccccgacatcgaaaaaatt
cttcgcaaatgccccagcgatcggcagacgcttctactctcggcgacgatgccgaatgaa
gtggaaggactggcagcgaagttcatgaagaaccccgagcggatcgacatgtctgaagat
gcgctcgtctcgaccgagatgatcgagcaattcatcatcaccgtcgatcacgatcggaaa
ttcgacacgctcacccgcgtgttgcttcaggagcgtccgaagcaggtcatcgtcttcacc
cgaacgaaacggggcgcggacacgctcggtgcgaaatttatgcggaagctcaaaggcgtt
gaactgatccatggcgacctggcccagtcgaagcgagaccgcgtgctgcgagagtttcga
gccggcagcgtgcggatgttgattgcgaccgacgttgtcggacgcgggatcgacatcagc
ggagtctcgcacatcatcaactacgatatcccggaattttgcgatgactacgtgcatcgc
atcgggcggacggggcgactttcctccgcatcgaaggggcgcgcaattaccttcgtttgc
cgagatcagggtgaccagctcaccaacattgaaatgcgggtcaacaaactgctcgaacag
tacgaagtacgcggcttcgaaccggtccgggctcagaagaaggccgggcacgtcgacgac
aagcagtcgaccgagtattccggcgtgaagtcatcaaagtcctcagtgtattcgcacgct
taa
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