Stratiformator vulcanicus: Pan189_26490
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Entry
Pan189_26490 CDS
T09804
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
svp
Stratiformator vulcanicus
Brite
KEGG Orthology (KO) [BR:
svp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svp03016
]
Pan189_26490 (rtcB)
Enzymes [BR:
svp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pan189_26490 (rtcB)
Transfer RNA biogenesis [BR:
svp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pan189_26490 (rtcB)
Prokaryotic type
tRNA splicing ligases
Pan189_26490 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDT38259
UniProt:
A0A517R2Z8
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All DBs
Position
3300846..3302240
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AA seq
464 aa
AA seq
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MNNSQLRKIGVPDECLTPAMEAIQKLAAAGELRGRNMKKDFGWVLAEPERFVEDEHLGGF
ARAVIEEREFQPAEPIDYRTWGSDIDDQAHSQMRDACRIPLATNAALMPDAHVGYGLPIG
GVLATEGTVIPYAVGVDIACRMKLSVFDVPTTAFSERFDDLKRSLEKGTRFGVGSSYGRS
GRQDHDVMDRDWSITRITRENRDKAWNQLGTSGSGNHFVEYGELTLSERDDELGLDKGTY
LALLSHSGSRGAGASVCSTYSGIARNYLPKRYEHLGRLAWLDLDSEAGQEYWAAMNLMGD
YAAANHDVIHRRVSKLLGAEIVAGVENHHNFAWKERHGDRELIVHRKGATPAGEGVLGVI
PGSMADPAYVVRGRGEPESLLSASHGAGRRMSRKKAKDTYNLKAVRGDLAAKGITILSAG
ADEVPGVYKNIGDVMREQEDLVEIVARFNPKVVKMCGDGSKAED
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaacaattcacaactccgcaagatcggcgttccggatgagtgcctgacgccggcgatg
gaggcgattcaaaagctcgccgcggcgggagagctgcgcggccggaacatgaaaaaggac
ttcggttgggtgctggccgagccggagcgattcgttgaggacgagcatctcggcggcttc
gctcgcgctgtgatcgaggagcgggagttccagccggccgagccgattgattaccgcacc
tggggtagcgacattgacgatcaggcgcatagtcaaatgcgcgacgcctgccggattccg
ttggccaccaacgcggcgctcatgcccgatgcgcacgtcggttatggactgccgatcgga
ggcgtccttgcaaccgagggaactgtgatcccttacgcggtgggtgtcgacatcgcctgc
cggatgaagctatcggtcttcgatgtacccaccacggccttcagtgagcgattcgatgac
ttgaagcggtcgctcgagaaaggcacgcggttcggcgtcggctcgagctacggccggtcg
gggcggcaggatcatgacgtgatggaccgcgactggtcgatcacgcggattacccgcgag
aaccgcgacaaggcttggaaccaactcggaacgtcgggctcgggcaaccacttcgtcgag
tacggcgaactgacgctctcggagcgtgacgacgaacttggcctcgataaaggaacttac
ctcgcgctactgagccacagtggcagccgtggcgcgggcgcatcggtttgctcgacttac
agcgggatcgctcgaaattatctgccgaagcggtacgagcatctcggccggctcgcatgg
ctcgacctcgacagcgaagccggtcaggagtactgggcggcgatgaacttgatgggcgat
tacgccgcggcaaatcacgatgtcattcaccggcgagtgtcgaagctcctcggtgcggag
atcgtcgccggagtcgaaaaccaccacaactttgcgtggaaggagcggcacggcgaccgc
gagctgatcgtccatcgcaaaggggccacgcccgcgggcgaaggcgtgctgggtgtgatc
cccggatcgatggctgatccggcctatgtcgtgcgaggtcgcggggagccggagagctta
ctctcggcgtctcacggcgcggggcggcggatgtctcgcaagaaagcgaaagacacctac
aacctgaaagcggtcagaggtgacctcgccgcgaagggaatcacaatcctctccgccgga
gccgacgaagtgccgggcgtctacaagaacatcggcgacgtgatgcgagagcaggaggac
ctcgtcgagattgttgccaggttcaatccgaaggttgtgaagatgtgcggcgacggtagc
aaggcggaagattaa
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