Stratiformator vulcanicus: Pan189_42020
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Entry
Pan189_42020 CDS
T09804
Symbol
mfd_2
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
svp
Stratiformator vulcanicus
Pathway
svp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pan189_42020 (mfd_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svp03400
]
Pan189_42020 (mfd_2)
Enzymes [BR:
svp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pan189_42020 (mfd_2)
DNA repair and recombination proteins [BR:
svp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pan189_42020 (mfd_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
MFD_D3
RecG_dom3_C
AAA_22
UB2H
DnaB_bind
Motif
Other DBs
NCBI-ProteinID:
QDT39791
UniProt:
A0A517R7J5
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All DBs
Position
complement(5043698..5047093)
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AA seq
1131 aa
AA seq
DB search
MSLTEQAEAAGLGDLPRLWADNADFGEIATLLRKRQSVSIDGAWGSACALVAATIATRPG
DSTGGSEPLVCVTDDVDDFAADLSAFLSIDPVVFPAWESLPSEHSAADPVFGRRLRLIEE
LSAGAGPTLIVTSLPALIQPIPPREVLEDATRFVRTGDEIEPDELMGWLVSRGFERVDAV
ERPGEFAMRGGILDVWTADAVDPLRIEFFGDEIDGLRRFDVDTQRKVEDVEQVRLTLINV
NDEASNATRNKASRERKRPENPHPENAKRNANGTSFLDLVERDTPIVLVELERLIEEART
YLDRLDDVGGLFCVEQTLAQITDHPTAAIATLGADSAERSFHLDVESVERFAGDRKRVIN
ELASIIRPDERVLIACHNEGERRRLNEMLVAAEAEEEVSGEATATDESAFRPPLSAFRSR
VSLTIGRVTKGFRLVPERLTIIGDNELFGRTEVRRLTRRKRHDARAIDTFLDLKVGDLIV
HLTNGIGRYRGMKLLEKGDQQEEHLELEFADGLRVFVPVSLIHLVQKYIGAAKAAPPLSK
LGGKTWARKKERVAEAVKDMAADMIRMQAARESAPGIACPPDSHWQKEFEDAFPYTETPD
QVEAIHESKGDMLRERPMDRLICGDVGYGKTEVALRAAFKAVDAGRQVAVLVPTTVLCEQ
HLRSFSDRLAEFPITVESLSRFRSAGEQRKIVAGLKTGGVDIVIGTHRLVSKDVEFKDLG
LLVIDEEQRFGVEIKESLKRLRLDVDVMTLSATPIPRTLHMSLLGIRDISNLVTPPQDRQ
AIETRISRWNPGLIRNAIVRELNRGGQAYFVHNRVHNIRAVADKLQAIVPEASIGIIHGQ
MGADELEMTLSEFVLGRIDILVATTIIESGLDIPNANTMFIHQADKYGLADLHQLRGRVG
RYKHRAYCYLILEEGRTLTPNAARRLKAIEEYSELGAGFKIAMRDLEIRGAGNILGNEQS
GHISSVGYELYCQLLENAVRGLKGEQAREPLTVNVDLPVSAFIPNSYIPSGRPKIETYRK
FSNVRSEEELTQLVDELRDRFGPIPSPVERLIEVKRLQVFARYWKIEEIRIDQDDTAFLY
RDESRIEALRQRIGRDFRVVDRKQAFCRMNCDLSDDAAVLERLKSVLRPSI
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgacggaacaggcggaggcggcgggacttggtgacctgccgcggttgtgggcg
gacaacgcggacttcggcgaaatcgcgacgctgctgagaaaacggcagagcgtctcgatc
gacggagcctggggctcggcgtgcgcgctcgttgcggcgacgattgccacgcgacctggc
gattccaccggcggttctgagccgctggtttgcgtgacggacgatgtcgacgacttcgcg
gcagatctctcggcgtttctgagcatcgatccggtggtgttccccgcgtgggaatcgctg
ccgagcgagcattccgcggccgatccggtctttggtcggcggctgcggctgatcgaagag
ctttccgccggtgccggtccgacgctgatcgtgacgagtctgccagcattgattcagccg
atcccgccgagggaagtgctcgaagatgcgacccggttcgttcggaccggcgacgagatc
gagccggatgaactgatgggctggctggtaagccgcggtttcgagcgggtcgacgccgtc
gaaaggcctggcgagttcgcgatgcgtggcggcattctcgacgtgtggaccgccgacgcg
gtcgacccattgcggatcgaattcttcggcgacgagatcgatggactgcggcggttcgac
gtcgacacgcagcgcaaagtcgaagacgtcgaacaggttcgtctcacgctgatcaacgta
aacgacgaggcaagcaacgctactcggaacaaggcgagccgggagcgtaagcgaccggag
aacccccaccctgaaaatgcaaaacgaaacgccaacgggacttcgtttctcgatctagtc
gaacgcgacacgcccattgtacttgtcgagttggagcgcctgatcgaggaggctcggacc
tatctcgaccgactcgacgatgtgggcgggctgttctgcgtcgagcaaacattggcgcag
atcaccgatcatccgacggcggcgattgccacgttgggggccgatagtgccgaacgctca
tttcacctggacgtcgaaagcgttgagcgattcgccggcgatcggaagcgagtgatcaat
gaattggcatcgatcatccgtccggacgaacgggtgctgatcgcctgccacaacgaggga
gaacgccgccggctcaatgaaatgctcgtcgccgccgaggcggaagaggaggtgagcggt
gaagcgaccgcgaccgacgagtcggcgttccgccctccgctttcggcatttcgctctcgc
gtgtcgctcacgatcggccgggtcacgaaaggctttcggctcgtgccggagcggctgacg
atcatcggcgacaatgaactgttcggccggaccgaggtccgccgactcacgcgccgtaag
cgtcacgatgcccgcgcgatcgacacgtttcttgacctcaaggttggcgatctgatcgtc
cacctgacgaacgggatcggtcgctatcgagggatgaagctcctcgaaaagggtgatcag
caggaagagcatctcgaactcgaattcgccgacgggctgcgggtcttcgtgccggtctcg
ctgattcacttggtgcagaaatacatcggggcggccaaggcggcgcccccgctgtcgaaa
cttggcggcaagacgtgggcacgtaagaaagagcgggtggccgaagccgtcaaagatatg
gcggccgacatgatccgcatgcaggcggcacgcgaatcggcccccggcatcgcctgccct
cctgattcccattggcagaaggaattcgaagacgcgtttccctacaccgagacgcccgac
caagtggaggcgattcacgagtccaaaggcgacatgctgcgcgagcggccgatggatcgg
ctgatctgcggagacgtcggttacggcaagacggaagtcgcactacgggcagccttcaag
gcggtcgatgcggggcggcaggtggcggtcctcgtgcccacaacggtgctgtgcgaacaa
cacctccgcagtttttccgaccggctcgccgagttcccgatcaccgtcgaatcgctatcg
cgatttcgctcggcgggggaacaacgcaagatcgttgcggggcttaagacaggcggtgtc
gacattgtaatcggcacgcaccggctggtctcaaaagacgtcgagttcaaagacctcggg
ctgctcgtgatcgacgaggagcagcgattcggcgtcgaaattaaggaatcgctcaagcgg
ttgcggctcgatgttgacgtgatgacgctctcggcgacgccgatccctcgaacgctgcac
atgtcgctgctcggtattcgcgacatctccaatttggtgactccgccgcaggaccggcag
gcgatcgaaacgcggatctcacgttggaacccgggcctgattcgcaatgcaatcgtgcgg
gaactcaaccgcggcggtcaggcgtacttcgtgcataaccgggtccacaacatccgcgcg
gttgccgacaaattgcaggcgatcgtgccggaggcgtcgatcgggatcattcacggtcaa
atgggggcggacgaactggaaatgacgctgtccgaattcgtcctcggccgaatcgatatc
ctcgtggcgaccacgatcatcgaaagcgggctcgacatcccgaacgcgaacacgatgttc
attcatcaggccgacaagtacggcctcgccgatctgcaccaactccgcgggcgggtcggc
cgctataagcatcgagcctattgctacttgattctcgaagagggtcgcacgctgacgcca
aacgcggcgcggcggctcaaggcgatcgaagagtacagtgaactgggggccggctttaaa
atcgcgatgcgcgacttggagattcgcggggccggcaacatcctcggcaatgagcagagc
gggcacatctcgagcgtcggatacgaattatattgccaattgctcgaaaacgccgtccgc
ggtctcaaaggcgaacaggcgcgcgaacctttgacggtgaatgtcgatttgcccgtctct
gcgtttattcccaactcctatattccgtccggtcggccgaagatcgagacctaccgcaag
ttttctaacgtgcgatctgaggaagaactcacgcaacttgtcgatgagttgcgggataga
ttcgggccaattccttcgcctgtggagcgactgatcgaagtcaaacgactgcaagtcttt
gcgcgatactggaagatcgaggaaatccgcatcgatcaggacgacacagctttcctctat
cgagacgaatcgcggatcgaagcacttcggcaacggatcggtcgtgattttcgggtggtc
gaccgcaagcaggcgttctgccggatgaattgcgacctgtccgatgacgctgctgttctg
gaacgtctgaaatcggtgttgcggccatcgatttaa
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