Streptomyces vinaceusdrappus: N6Q81_14555
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Entry
N6Q81_14555 CDS
T11167
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
svq Streptomyces vinaceusdrappus
Pathway
svq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N6Q81_14555 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svq03400
]
N6Q81_14555 (mfd)
Enzymes [BR:
svq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N6Q81_14555 (mfd)
DNA repair and recombination proteins [BR:
svq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N6Q81_14555 (mfd)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UXI79168
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Position
complement(3161689..3165222)
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AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDTALAEAISAAADGNRMHVDLVGPPAARPFAIAALARETGRPVLAVTA
TGREAEDLAAALRSLLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGSTADLNEVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVADHGLWAPPCRELL
LTEDVRERAAALAEDHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVDAASLWSIADVRDRARELDMM
WWSVSPFAADDALEEADTLKLGMHAPETYRGDTAKALADTKGWLADGWRAVYLTEGHGPA
ARTVEVLGGEGIAARLDNDLDTLSPSVVHVSCGSIEHGFVDRALKLAVLTETDLTGQKAA
GREGARMPARRRKTIDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAK
RGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVNVKALSRFQTDTEAK
ATLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEHKQIGAAIRRELLREGQVF
YIHNRVESIDRAAAKLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGG
VEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANSEEDIKAVREELVDRYGKL
PEPVENLLLVAGLRMLARACAVGEIVLQGNNIRFAPVELRESQELRLKRLYPGSVIKAGS
HQVLVPRPKTAKVGGKPLVGRELLGWVGEFLTSILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctagacgccgtcgtcaaggacaccgccctcgcggaagcgatc
tcggcggccgcagacggcaaccgcatgcacgtcgacctggtcggcccgcccgccgcacgg
cccttcgcgatcgccgccctggcccgcgagacgggccgcccggtgctggcggtgaccgcg
acggggcgcgaggcggaggacctggcggcggccctgcgctccctgctgccgcccgagggc
gtcgtcgagtacccgtcctgggagaccctgccgcacgagcggctcagcccccgcagcgac
accgtcggccgccgcctcgccgtactgcgccgcctggcgcacccccgccccgacgacccc
gagaccggcccggtctccgtcgtcgtcgcgcccgtgcgctccgtgctccagccgcaggtc
aagggcctcggcgacctggagccggtcgccctgcgcaccggctccaccgccgacctgaac
gaggtcgtcgaggccctggcggccgccgcgtacgcgcgcgtggagctggtggagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtgttcccgccgaccgaggaacacccc
ctgcgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaggtcgccgaccacggcctgtgggccccgccctgccgcgagctgctg
ctcaccgaggacgtccgcgagcgggccgccgccctggccgaggaccaccccgagctgggc
gaactgctcggcaagatcgccgagggcatcgcggtcgagggcatggagtccctggccccc
gtcctcgtggacgacatggagctgctgctggacgtgctgcccaagggctccatggcggtg
gtctgcgacccggagcgggtccgcacccgcgccgccgacctggtcgccacctcgcaggag
ttcctccaggcgtcctgggcggccacggcgggcgggggcgaggcaccgatcgacgtggac
gcggcctccctgtggtccatcgctgacgtccgggaccgggcccgcgagctggacatgatg
tggtggtcggtctcccccttcgccgccgacgacgcgctggaggaggccgacaccctcaag
ctcggcatgcacgcccccgagacctaccgcggcgacaccgccaaggcgctggccgacacc
aagggctggctcgccgacggctggcgcgcggtctacctcaccgagggccacggcccggcc
gcccgcaccgtcgaggtcctcggcggcgagggcatcgccgcccgcctcgacaacgacctg
gacaccctcagcccctccgtcgtccacgtctcctgcggctcgatcgagcacggcttcgtc
gaccgggcgctcaagctcgccgtcctcaccgagaccgacctgaccgggcagaaggccgcc
ggccgcgagggcgcccgcatgcccgcccggcgccgcaagaccatcgacccgctcaccctg
gagtcgggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtg
cagcgcaccgtgcagggcgccacccgcgagtacctggtcgtggagtacgcccccgccaag
cgcggccagcccggcgaccggctctacatccccaccgaccagctggagcagatcaccaag
tacgtcggcggcgaggcccccaccctgcaccgcctgggcggcgcggactggaccaagacc
aaggcgcgcgccaagaaggcggtcaaggagatcgccgcggacctgatcaagctctacagc
gcgcggatggcggcgcccggtcacgccttcggcgccgacaccccctggcagcgcgagctg
gaggacgccttcccctacgccgagaccccggaccagctcaccaccatcgccgaggtcaag
gaggacatggagaagacggtccccatggaccgtctgatctgcggcgacgtgggctacggc
aagacggagatcgcggtccgcgccgccttcaaggccgtccaggacggcaagcaggtcgcc
gtgctggtccccacgaccctgctggtgcagcagcacttcgggaccttcagcgagcggtac
gcgcagttcccggtgaacgtgaaggcgctctcccgcttccagaccgacaccgaggcgaag
gcaaccctggagggcctgcgcgacggctcggtggacatcgtcatcggcacccaccgcctg
ttctcctcggagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgc
ttcggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctgacc
atgtccgccacccccatccccaggaccctggagatggcggtcaccggcatccgcgagatg
tccacgatcaccaccccgccggaggagcgccacccggtgctgaccttcgtcggcccctac
gagcacaagcagatcggcgccgcgatccgccgcgagctgctgcgcgagggccaggtcttc
tacatccacaaccgcgtcgagtccatcgaccgggcggccgccaagctgcgcgagatcgtc
cccgaggcgcggatcgccaccgcccacggccagatgtccgagcaggccctggagcaggtc
gtcgtcgacttctgggagaagaagttcgacgtgctggtctccaccaccatcgtcgagtcc
ggcatcgacatctccaacgccaacaccctcatcgtcgagcgcggcgacaacttcggcctc
agccagctccaccagctgcgcggccgcgtcggccgcggccgtgagcgcggctacgcctac
ttcctctacccgccggagaagccgctgacggagaccgcccacgagcgtctggcgaccatc
gcccagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgc
ggcgcgggcaacctgctgggcggcgagcagtccggccacatcgccggtgtcggcttcgac
ctgtacgtacgcatggtgggcgaggcggtcgccgactaccgggcctccctggagggcggg
gtcgaggaggagccgccgctcgaggtcaagatcgagctgcccgtcgacgcgcacgtcccg
cacgactacgcccccggcgagcggctgcggctccaggcgtaccggtccatcgcctccgcc
aacagcgaggaggacatcaaggccgtacgcgaggaactcgtcgaccggtacggcaagctg
ccggagccggtggagaacctgctgctggtggcgggcctgcgcatgctcgcgcgggcgtgc
gccgtcggcgagatcgtgcttcagggcaacaacatccgcttcgcgccggtggagttgcgg
gagtcgcaggagctgcgcctgaagcggctctaccccgggtccgtcatcaaggcgggctcc
caccaggtcctcgtgccgcgtccgaagaccgcgaaggtgggcggcaagccgctggtcgga
cgcgaactgctcggctgggtcggcgagttcctgacctcgatcctggggtcctga
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integrated database retrieval system
