Streptomyces vinaceusdrappus: N6Q81_28415
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Entry
N6Q81_28415 CDS
T11167
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
svq Streptomyces vinaceusdrappus
Pathway
svq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
svq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N6Q81_28415 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svq03400
]
N6Q81_28415 (ligD)
Enzymes [BR:
svq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N6Q81_28415 (ligD)
DNA repair and recombination proteins [BR:
svq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N6Q81_28415 (ligD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UXI81700
UniProt:
A0ABY6C1N1
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All DBs
Position
6110336..6111262
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AA seq
308 aa
AA seq
DB search
MSRDAVRTVRAGRRSVEVHRPDKVLFPAGSGTEEYTKADLVDYYHSVAPFVLPHLRGRPL
MLERRPDGVDGPRFMQKNTPEHYPDWIARAEVAKEGGTVRHTVCDDTATLLYLADQAALT
LHRWLSRVGAVQTPDLMVFDLDPAGDDFPAVREAAVLLGGLLDELKLPSALMTTGSRGLH
VVVPLNGRHGFDEVREFARDVADVLAAGHPDRLTTAARKKDRGDRLYLDIQRNAYAQTAV
APYTVRALPGAPVATPLSWDQLDDPALHARRWTIADAADQARTRPWAPITGRARSLGPAR
RRLDALRG
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
gtgagccgtgacgccgtacggaccgtccgggccggccggcgctcggtggaggtgcaccga
ccggacaaggtgctgttccccgcggggagcggcaccgaggagtacaccaaggccgacctg
gtcgactactaccactccgtggccccgttcgtgctgccgcacctgcggggccgcccgctg
atgctggagcgtcgccccgacggcgtggacgggccccggttcatgcagaagaacaccccg
gagcactacccggactggatcgcccgtgcggaggtggccaaggagggcggcaccgtccgc
cacacggtgtgcgacgacaccgccacgctcctgtacctcgccgaccaggccgccctcacc
ctgcaccgctggctctcccgggtcggggcggtccagacgccggacctgatggtcttcgac
ctcgatccggccggcgacgacttcccggccgtgcgggaggcggccgtcctgctgggcgga
ctgctcgacgagctgaagctgccgtcggcgctgatgaccaccgggtcccgcgggctgcac
gtggtcgtgccgctgaacggccgtcacggattcgacgaggtacgggagttcgcccgcgac
gtcgccgacgtgctggccgccgggcatcccgaccggctcaccaccgcggcccgcaagaag
gaccgcggcgaccggctctacctcgacatccagcgcaacgcctacgcgcagaccgcggtc
gccccctacaccgtccgggcgctgcccggcgcgcccgtcgccaccccgctgtcctgggac
cagctcgacgatcccgcgctgcacgcgcgccgctggacgatcgcggacgccgccgaccag
gcgcgtacccgcccctgggccccgatcaccgggcgcgcgcggagcctgggccccgcccgg
cggaggctggacgccctgcgcggctga
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