Streptomyces viridifaciens: CP971_10355
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Entry
CP971_10355 CDS
T06960
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
svr
Streptomyces viridifaciens
Brite
KEGG Orthology (KO) [BR:
svr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svr03016
]
CP971_10355
Enzymes [BR:
svr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CP971_10355
Transfer RNA biogenesis [BR:
svr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CP971_10355
Prokaryotic type
tRNA splicing ligases
CP971_10355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QEU99647
LinkDB
All DBs
Position
complement(2383935..2385128)
Genome browser
AA seq
397 aa
AA seq
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MTYTEVPGIRVPIRMWTDPATVEGAALQQLRNISSLPWLHGLAVMPDVHLGKGATVGSVI
AMKGAVCPAAVGVDIGCGMSAVKTSLTAEDLPDGLSGLRSKIEQAIPVGRGLHTDPVDPA
KLHGFRAAGWDDFWQRFDGVAEEVKWRRERAMQQMGTLGAGNHFCEVCIDTSGSVWLMLH
SGSRNIGKELAEHHMGVARSLSHNQGLVDQDLAVFLAKTPEMAAYRQDLFWAQEYAKHNR
AVMMALFQDVVRREFAKADVTFDEVISCHHNYVAEERYDGVDLLVTRKGAIRAGSGDLGI
IPGSMGTGSYIVRGLGNAASFNSASHGAGRKMSRNAAKKRFTTRDLAEQTAGVECRKDSG
VVDEIPGAYKNIEKVIDQQKDLVEVVAHLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgacgtacaccgaggtgcccggaatccgggtgccgatccggatgtggaccgacccggcg
acggtcgagggcgcggccctgcagcagctgcgcaacatcagctccctgccctggctgcac
ggcctcgccgtgatgccggacgtccacctgggcaagggcgcgaccgtcggttccgtcatc
gccatgaagggcgcggtctgcccggcggcggtcggcgtcgacatcggctgcgggatgagc
gcggtgaagacctccctcaccgccgaggacctcccggacggcctctccggcctgcgctcc
aagatcgagcaggccatcccggtcggccgaggcctccacaccgacccggtcgacccggcc
aagctgcacggcttccgcgcggcgggctgggacgacttctggcagcgcttcgacggggtc
gcggaggaggtcaagtggcgccgcgagcgggcgatgcagcagatgggaacgctcggggcc
ggcaaccacttctgcgaggtctgcatcgatacgtccggttcggtgtggctgatgctgcac
tccggctcccggaacatcggcaaggagctggcggagcaccacatgggcgtcgcccgatcg
ctttcgcacaaccagggcctggtcgaccaggacctggcggtgttcctcgcgaagaccccg
gagatggccgcctaccgccaggacctcttctgggcgcaggagtacgcgaagcacaaccgc
gcggtcatgatggcgctcttccaggacgtcgtccggcgtgagttcgccaaggcggacgtc
accttcgacgaggtgatcagctgccaccacaactacgtggcggaggagcggtacgacggc
gtcgacctgctggtgacccgcaagggcgcgatccgggccggctccggcgacctcgggatc
atcccgggctcgatggggacgggttcctacatcgtccgcggcctgggcaacgcggcttcg
ttcaactccgcctcgcacggcgcgggccgcaagatgagccgcaacgccgccaagaagcgg
ttcaccacacgtgacctggccgagcagaccgcgggcgtggagtgtcgcaaggacagcggt
gtcgtggacgagatcccgggcgcctacaagaacatcgagaaggtcatcgaccagcagaag
gacctcgtcgaggtggtcgcgcacctcaagcaggtggtctgcgtcaagggctga
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