Streptomyces viridifaciens: CP971_10500
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Entry
CP971_10500 CDS
T06960
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
svr
Streptomyces viridifaciens
Pathway
svr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP971_10500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svr03019
]
CP971_10500
03400 DNA repair and recombination proteins [BR:
svr03400
]
CP971_10500
Enzymes [BR:
svr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CP971_10500
Messenger RNA biogenesis [BR:
svr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CP971_10500
DNA repair and recombination proteins [BR:
svr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CP971_10500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
Helicase_RecD
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
QEU99667
LinkDB
All DBs
Position
2420243..2422438
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AA seq
731 aa
AA seq
DB search
MKQPDTHTTATADRAEVRARAEAVLRELAGPAAGLREDQWTAIEALVVDHRRALVVQRTG
WGKSAVYFIATALLRARGAGPTVIVSPLLALMRNQVESAARAGIHARTINSANTEEWEEI
QSEVAAGKVDILLVSPERLNNPDFRDQVLPKLAASTGLLVVDEAHCISDWGHDFRPDYRR
LRTMLADLPPGVPVLATTATANARVTADVAEQLGTGTTDEHALVLRGPLDRESLTLGVLA
LPDPAHRLAWLADHLDRLPGSGIVYTLTVAAAEEVTAFLRERGFPVASYSGRTEDAERRT
AEADLLANRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVDRAEVL
LLPGREDEAIWRYFASLAFPPEEQVRRTIDALAEAGRPLSTAALEPRVDLRRARLETMLK
VLDVDGAVRRVKGGWTATGQSWEYDTARYAKVAASREAEQRAMRDYAATTGCRMEFLRRQ
LDDEQAAPCGRCDNCAGPLHTPEVSDGTLAAARAALGRPGVSFEPRRLWPTGMDALGVPL
KGRIPAAEQAETGRALGRLSDIGWGNRLRTLLAEQAPDAPVPGEAVDALVAVLADWARGP
GGWAGPATAEGTRLDRPVGVVTMASSTRPQLVGSLGARIAEIGRLPLLGRIEYAGGRPPQ
GARSNSAQRLHGLAGALVLPPELEQAVAAAAGPVLLVDDLVDSGWTVTVAARLLRRAGAG
AVLPLVLAVQG
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagcccgacacccacaccaccgccaccgccgaccgcgccgaagtccgggcgcgg
gccgaggccgtcctgcgcgagctggccggccccgccgccggcctgcgcgaggaccagtgg
acggccatcgaggccctcgtggtcgaccaccgccgcgccctggtcgtccagcgcaccggc
tgggggaagtccgcggtctacttcatcgccacggccctgctccgcgcccgcggcgccggg
ccgacggtgatcgtctccccgctgctcgccctgatgcgcaaccaggtcgagtcggcggcc
cgggccggcatccacgcccgcaccatcaactcggccaacaccgaggagtgggaggagatc
cagtccgaggtcgccgccggcaaggtcgacatcctgctggtcagcccagagcggctgaac
aacccggacttccgcgaccaggtgctgccgaagctcgccgcctccaccggcctgctggtg
gtcgacgaggcccactgcatctccgactggggccacgacttccgccccgactaccgccgg
ctgcgcaccatgctcgccgacctgccgcccggtgtcccggtgctcgccaccaccgccacc
gccaacgcccgggtcaccgcggacgtcgccgagcagctcggcaccggcaccaccgacgag
cacgctctggtgctgcgcggtccgctcgaccgggagagcctcaccctgggtgtgctcgcc
ctgcccgacccggcgcaccggctcgcctggctggccgaccacctcgaccggctccccggc
tcgggcatcgtctacaccctgacggtggccgccgccgaggaggtgacggcattcctgcgc
gagcgcggcttcccggtggcctcctactccggccgcaccgaggacgccgagcgccgcacc
gccgaggccgacctgctggccaaccgggtcaaggcgctggtcgccacctccgcgctcggc
atgggcttcgacaagcccgacctcggcttcgtcgtccacctgggctcgcccagttcgccg
atcgcctactaccagcaggtcggccgggccgggcgcggtgtggaccgggccgaggtgctg
ctgctgcccgggcgcgaggacgaggcgatctggcgctacttcgcctcgctcgccttcccg
ccggaggaacaggtgcgccgcaccatcgacgcgctcgccgaggcgggccgcccgctctcc
accgccgccctggagcccagggtggacctgcgccgcgcccggctggagaccatgctcaag
gtgctggacgtggacggcgccgtccgccgggtcaagggcggttggacggccaccgggcag
agctgggagtacgacaccgcccgctacgccaaggtcgccgcctcccgggaggcggagcag
cgggcgatgcgcgactacgccgcgaccaccggctgccggatggagttcctgcgccgccag
ctggacgacgaacaggccgcgccgtgcgggcggtgcgacaactgcgcggggccgctgcac
accccggaggtgtccgacgggacgctggccgcggcccgggccgcgctcggccgcccgggc
gtgagcttcgagccgcgccgcctctggcccaccgggatggacgcgctcggggtgccgctg
aagggccggatcccggcggccgagcaggcggagaccggccgggcgctcggccggctgtcc
gacatcggctggggcaaccggctgcgcaccctgctcgccgagcaggcgccggacgcgccg
gtgcccggtgaggcggtggacgcgctggtggcggtgctcgccgactgggcgcgcggcccg
ggaggctgggccgggcccgcgacggcggagggcacccggctggaccggccggtcggcgtg
gtgaccatggcctcctcgacccgcccccagcttgtcggcagcctcggcgcgcggatcgcc
gagatcgggcggctgccgctgctcggccggatcgagtacgccggcgggcggcccccgcag
ggggcccgcagcaacagcgcccagcggctccacgggctggccggggcgctggtcctgccg
ccggagctggagcaggcggtggcggccgccgccgggccggtgctgctggtcgacgacctc
gtggactcggggtggacggtcaccgtggccgcccggctgctgcgccgggcgggggccgga
gcggtgctgccgctggtcctggccgtacaggggtga
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