Streptomyces viridifaciens: CP971_13420
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Entry
CP971_13420 CDS
T06960
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
svr
Streptomyces viridifaciens
Pathway
svr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CP971_13420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svr03400
]
CP971_13420 (mfd)
Enzymes [BR:
svr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CP971_13420 (mfd)
DNA repair and recombination proteins [BR:
svr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CP971_13420 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
Cas3-like_C_2
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
QEV00152
LinkDB
All DBs
Position
complement(3113104..3116736)
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AA seq
1210 aa
AA seq
DB search
MSLTGLLDVVARDAALAEAIEAATATGAAAGGRRHLDLVGPPAARPFAIAALARALAGHA
AGERGRPVLAVTATGREAEDLAASLRSLLPPDAVAEYPAWETLPHERLSPRSDTVGRRLA
VLRRIVHPRADDPAAGPVQVIVAPVRSVLQPQVKGLAELEPVAVGRGESHDLEEVARRLA
AAAYARVELVEKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEIA
EHGLWAPPCRELLLTDEVRARAAELSAEQPGLAEILDKIAEGIAVEGMESLAPVLVDDME
LLVDVLPLGSVAVVCDPERVRTRAADLVATSQEFLQASWVAAAAGGDRPIDLETIDVSAA
SLRSLAEVREHAAEIGLPWWSVSPFATSESTVDTILEFDANTLTLGMHAVEAYRGDTARA
IADAKERLAADWRVVMVTEGHGPASRLAEVLGNEGIPARLVADLAEAPTRDVVYVACGSI
EHGFVDEALKLTVITETDLSGQKSSTKDMRRMPSRRRNAIDPLALVAGDYVVHEAHGVGR
YVEMVQRTVQGATREYLVLEYAPAKRGHPGDRLFVPTDQLDQVTKYVGGEAPTLHRLGGA
DWAKTKQRAKKAVKEIAADLIRLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTT
IAEVKADMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFST
FAERYANFPVTVKALSRFQTDSEAKAVLEGLFEGSVDVVIGTHRLFSSETRFKDLGLVIV
DEEQRFGVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLT
FVGPYDEKQISAAIRRELLREGQVFYIHNRVESIDKAAARLKDLVPEARIATAHGQMGET
QLEKVVVDFWEKEFDVLVSTTIVESGIDISNANTLIVERGDTFGLSQLHQLRGRVGRGRE
RGYAYMLYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIA
GVGFDLYMRMVGEAVAEFRESLANGGAEPEEEPLEVKIELPVDAHVPHDYAPGERLRLQA
YRSIAAVNSEADIQQVRDELVDRYGKLPEPVENLLLVAALRLYARRCGISDITLQGSNVR
FGPVELRESQQLRLNRLYPRSQVKAAAQQLLVPRPSTGRIGGRPLVGRELLDWCTEFLSA
MFDDLAGAKK
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaccggactgctcgatgtcgtcgcgcgggacgcggcgctcgccgaggcgatc
gaggcggccaccgccaccggagccgcggccggcggccgccgccacctggacctggtcgga
ccgcccgccgcccggccgttcgcgatcgccgcgctggcccgcgcgctggccgggcacgcc
gccggcgagcggggccgtccggtgctggccgtcaccgccaccggccgggaggccgaggac
ctggccgcctcgctgcgctcgctgctgccccccgacgcggtcgccgagtacccggcctgg
gagaccctgccgcacgagcggctgtcgccccggtcggacaccgtcggccgccggctggcc
gtactgcgccggatcgtgcacccgcgggccgacgacccggcggccggtccggtgcaggtg
atcgtcgccccggtccgctcggtgctccagccgcaggtcaaggggctggccgagctggag
ccggtggccgtcgggcgcggggagtcgcacgacctggaggaggtggcccgccggctcgcg
gcggccgcctacgcgcgggtcgaactggtcgagaagcgcggcgagttcgccgtccgcggc
ggcatcctggacgtcttcccgccgaccgaggagcacccgctgcgggtggagttctggggc
gacgacgtcgaggagatccgctacttcaaggtcgccgaccagcgctcgctggagatcgcc
gagcacggcctgtgggcgccgccctgccgtgagctgctgctgaccgacgaggtgcgcgcg
cgggccgccgaactgtccgccgagcagcccgggttggccgagatcctggacaagatcgcc
gagggcatcgcggtcgagggcatggagtcgctggcgccggtgctggtggacgacatggaa
ctgctggtagacgtgctgccgctcggctcggtcgcggtggtgtgcgacccggagcgggtc
cgcacccgggccgccgacctggtggccaccagccaggagttcctgcaggcctcctgggtc
gccgcggcggccggcggggaccggccgatcgacctggagaccatcgacgtctccgccgcc
tcgctgcgctcgctcgccgaggtgcgcgagcacgccgccgagatcgggctgccctggtgg
tccgtcagcccgttcgcgaccagcgagtccacggtcgacaccatcctggagttcgacgcc
aacacgctgaccctcggcatgcacgccgtcgaggcctaccggggcgacaccgcccgggcg
atcgccgacgccaaggagcggctggccgccgactggcgggtcgtcatggtgacggagggc
cacggcccagcctcccgcctggccgaggtactcggcaacgagggcatcccggcccggctg
gtcgccgacctcgccgaggcgcccacccgggacgtcgtgtacgtcgcctgcggctccatc
gagcacggcttcgtcgacgaggccctcaagctcaccgtcatcaccgagaccgacctgtcc
ggccagaagtcctccaccaaggacatgcgccggatgccgtcccgtcggcgcaacgcgatc
gacccgctggccctggtggccggcgactacgtggtgcacgaggcgcacggcgtcggccgg
tacgtggagatggtgcagcgcaccgtccagggcgccacccgcgagtacctggtgctggag
tacgcccccgccaagcgcggccaccccggcgaccggctgttcgtgccgaccgaccagctc
gaccaggtcaccaagtacgtcggcggcgaggccccgacgctgcaccggctcggcggcgcg
gactgggcgaagaccaagcagcgggccaagaaggcggtcaaggagatcgccgccgacctg
atcaggctgtactcggcgcggatggcggcgcccggccacaccttcggcccggacaccccg
tggcagcgtgagctggaggacgccttcccgtacgcggagacgccggaccagctgaccacc
atcgccgaggtcaaggccgacatggagaagtccgtcccgatggaccggctgatctgcggc
gacgtcggctacggcaagaccgagatcgccgtccgggccgccttcaaggcggtgcaggac
ggcaagcaggtggcggtgctggtgccgaccacgctgctggtgcagcagcacttctccacc
ttcgccgagcgctacgccaacttcccggtgacggtgaaggcgctgtcccgcttccagacc
gacagcgaggccaaggccgtcctggaggggctgttcgagggctcggtggacgtcgtcatc
ggcacccaccggctgttctcctccgagaccaggttcaaggacctcggcctggtcatcgtc
gacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctgcgcgccaac
gtggacgtgctcaccatgtccgcgacgccgatcccgcgcaccctggagatggcggtcacc
ggcatccgtgagatgtccaccatcaccaccccgccggaggagcgccacccggtgctgacc
ttcgtcgggccgtacgacgagaagcagatctcggccgcgatccggcgtgaactcctgcgc
gagggccaggtgttctacatccacaaccgggtggagtcgatcgacaaggcggccgcgcgg
ctgaaggacctggtgcccgaggcgcggatcgccaccgcgcacgggcagatgggggagacc
cagctggagaaggtcgtcgtcgacttctgggagaaggagttcgacgtcctggtgtcgacc
acgatcgtggagtccggcatcgacatctccaacgccaacaccctgatcgtcgagcgcggc
gacaccttcggcctctcccagctgcaccagctgcgcggccgggtcggccgcggccgggag
cgcggctacgcgtacatgctgtacccgccggagaagccgctcaccgagaccgcgcacgag
cgcctggccaccatcgcccagcacaccgagatgggcgccggcatgtacgtcgcgatgaag
gacctggagatccgcggcgccggcaacctgctcggcggcgagcagtccgggcacatcgcg
ggcgtcggcttcgacctctacatgcggatggtcggcgaggcggtggccgagttccgcgag
tcgctggccaacggcggcgcggagccggaggaggagccgctggaggtgaagatcgagctg
ccggtcgacgcccatgtgccgcacgactacgcgcccggcgagcggctgcggctgcaggcc
taccgctcgatcgcggcggtcaactcggaggcggacatccagcaggtccgggacgaactc
gtggaccgctacgggaagctgccggagccggtggagaacctgctgctggtcgccgcactg
cggctgtacgcccggcggtgcgggatctcggacatcaccctccagggctcgaacgtccgc
ttcggcccggtggagctgcgtgagtcccagcagctgcggctgaaccggctctacccgcgc
agccaggtcaaggcggcggcccagcagctgctggtgccgcggccgagcaccgggcgcatc
ggcggcaggccgctggtcgggcgggagctgctggactggtgcaccgagttcctgtcggcg
atgttcgacgacctggcgggggcgaagaagtag
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