Streptomyces viridifaciens: CP971_15510
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Entry
CP971_15510 CDS
T06960
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
svr
Streptomyces viridifaciens
Brite
KEGG Orthology (KO) [BR:
svr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svr03019
]
CP971_15510 (hrpA)
Enzymes [BR:
svr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CP971_15510 (hrpA)
Messenger RNA biogenesis [BR:
svr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CP971_15510 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
APHB_HrpA
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
NNH7
T2SSE
NACHT
nSTAND_NTPase5
AAA_16
DUF6893
PhoH
AAA_30
RepB-RCR_reg
Motif
Other DBs
NCBI-ProteinID:
QEV00495
LinkDB
All DBs
Position
3566030..3570010
Genome browser
AA seq
1326 aa
AA seq
DB search
MPAVSSPAVQSAPVPAEGPGIGELAARLPELTLRDEVRIGRRLEGARRVRKPEARQKIAA
EIAADIDRAELLVEQRRGAVPKITYPAELPVSQKKDDILAAIRDHQVVIVAGETGSGKTT
QIPKICLELGRGVRGLVGHTQPRRIAARTVAERVAEELDTPLGEAVGWKVRFTDQVGQDT
LVKLMTDGILLAEIQTDRDLRQYDTLIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVVIT
SATIDPERFSRHFGDAPIIEVSGRTYPVEVRYRPVIDDGEDEADEADRDRDQIQAICDAA
QELQDEGPGDILVFLSGEREIRDTADALTKLKLRNTEVLPLYARLSSAEQHRVFQRSNLR
RIVLATNVAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIEAISQASANQRKGRCGR
TSDGICIRLYSEEDFLSRPEFTDAEILRTNLASVILQMTAAGLGDISAFPFLDPPDSRNI
KDGVHLLHELGALDPDEKDPRKRLTALGRKLAQLPVDPRMARMVLEADRNGCVRDVMVIA
AALSIQDPRERPAEKRQAADERHRRFSSETSDFLSYLAMWRYVREQQKELSSSAFRRMCK
SEFLNYLRIREWQDVYTQLRTVAKQLGVTIEEPHPDAEPDADRIHQSLLAGLLSHIGLFD
VEKREYGGARGARFAVFPGSGLFKKPPRWVMSAELVETSRLWARINAKIEPEWVEPLAGH
LIKRSYSEPHWEKKAGAVLAYEKVTLYGMPIVAQRKVNYGRIDPELCRELFIRNALVEGD
WETHHRFFAENRKLLGEVEELENRARRRDILVDDQTLFDFYDARLPDEVVSTRHFDSWWK
KARHEQPDLLNFEKSMLINDAADGVTEADYPDYWQQGKLRFKLTYQFEPGSDADGVTVHI
PLPVLNQVTAEGFDWQIPGLREELVTAYIKSLPKAIRRNFVPAPDFAKAALRQVKDRQEP
LLPSLEHALKRLTAVTVPPEAWDDERVPEHLKVTFRVVDGKRRLAESKDLEELRLKLKPK
LKETLSSAASGKGIEQSGLTAWPAGLPVLQRTFEQRSRGHSLRAYPALVDEGSSVGVKLF
DTPEAQAHAMWEGTRRLLMLTTTSPAKSIQGRLGNQAKLALSHSPHGSINALFEDVVSAA
TDRLMALAGGPAWDEAAFGKLHDKVRADLYDLSADTTLKTATALIAFHKASTRLKSVSSP
VLLNAVNDVRLHLASLVHPGFVTATGWQRLPDLKRYLLAVDRRLEALPNHPQRDAQQLLK
VQQVQQAYGELLAAVPPGRQPSEEVRAIRWMIEELRVSFFAQSLGTPSPVSEKRIMKAME
AARATL
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagtgagttctcccgcagtccagtccgcccccgtacccgccgagggtcccgga
atcggtgagctggccgcccgcctgcccgagctgaccctgcgcgacgaggtgcggatcggg
cgccggctggagggggcccgcagggtccgcaaacccgaggccaggcagaagatcgccgcc
gagatcgccgccgacatcgaccgcgccgagctgctggtcgagcagcgccggggcgccgtg
ccgaagatcacgtacccggccgagcttccggtcagtcagaagaaggacgacatcctggcg
gccattcgggaccaccaggtggtgatcgtcgcaggtgagaccgggtccggcaagaccacc
cagatcccgaagatctgcctggagctgggccgtggcgtgcgcggtctggtcggtcacacc
cagccgcgccggatcgccgcccgtacggtggccgagcgcgtcgcggaggagctggacacc
ccgctcggcgaggcggtcggctggaaggtccggttcaccgaccaggtcggccaggacacc
ctggtcaagctgatgacggacggcatcctgctggcggagatccaaaccgaccgcgatctg
cgccagtacgacaccctgatcatcgacgaggcgcacgagcgcagcctcaacatcgacttc
ctgctcggctacctcaagcagctgctcccccgccgccccgacctcaaggtcgtgatcacc
tccgcgacgatcgaccccgagcgcttctcccggcacttcggcgacgctccgatcatcgag
gtctccggccggacgtaccccgtcgaggtccgctaccgcccggtgatcgacgacggcgag
gacgaggccgacgaggcggaccgcgaccgcgaccagatccaggcgatctgcgacgccgcc
caggaactgcaggacgagggcccgggcgacatcctggtcttcctctccggcgagcgcgag
atccgcgacaccgccgacgccctcaccaagctgaagctgaggaacaccgaggtcctcccg
ctctacgcccgcctcagctcggccgagcagcaccgggtgttccagcgctccaacctgcgc
cggatcgtgctggccaccaacgtggccgagacctcgctgaccgtccccggcatcaagtac
gtgatcgacccgggcaccgcccggatctcccgctacagccaccgcaccaaggtgcagcgg
ctgccgatcgaggcgatcagccaggccagcgccaaccagcgcaagggccgctgcggccgc
acctcggacggcatctgcatccggctgtactcggaggaggacttcctctcccgccccgag
ttcaccgacgccgagatcctgcgcaccaacctcgcctcggtgatcctccagatgaccgcg
gccggcctgggcgacatctccgccttcccgttcctggacccgccggactcgcgcaacatc
aaggacggcgtccacctgctgcacgagctgggcgcgctggacccggacgagaaggacccg
cgcaagcgcctgaccgcgctcggccgcaagctcgcccagctcccggtggacccgcggatg
gcccgcatggtgctggaggcggaccgcaacggctgcgtgcgcgacgtcatggtgatcgcc
gccgcgctgtccatccaggacccgcgcgagcgccccgccgagaagcgccaggccgccgac
gagcggcaccgccggttctcctcggagacctcggacttcctctcctacctggcgatgtgg
cgctacgtccgggagcagcagaaggagctctcctcctcggcgttccgccggatgtgcaag
tcggagttcctcaactacctgcggatacgggagtggcaggacgtctacacccagctgcgc
accgtcgccaagcagttgggggtgacgatcgaggagcctcaccccgatgccgagccggac
gccgaccggatccaccagtcgctgctggccgggctgctctcccacatcggcctgttcgac
gtggagaagcgcgagtacggcggcgcccgcggcgcccgcttcgcggtcttcccgggctcc
ggcctgttcaagaagcccccgcgctgggtgatgtcggccgagctggtggagacctcccgg
ctgtgggcccggatcaacgcgaagatcgagcccgagtgggtcgagccgctggccgggcac
ctgatcaagcgcagctacagcgagccgcactgggagaagaaggccggcgccgtgctggcg
tacgagaaggtgaccctctacgggatgccgatcgtcgcccagcgcaaggtcaactacggc
cggatcgacccggagctctgccgcgagctgttcatccgcaacgcgctggtcgagggcgac
tgggagacccaccaccggttcttcgccgagaaccgcaagctgctcggcgaggtcgaggag
ctggagaaccgggcccgccgccgggacatcctggtggacgaccagaccctgttcgacttc
tacgacgcccggctgcccgacgaggtcgtctccacccggcacttcgactcctggtggaag
aaggcccggcacgagcagccggacctgctgaacttcgagaagtcgatgctgatcaacgac
gccgcggacggcgtcaccgaggccgactacccggactactggcagcagggcaagctgcgc
ttcaagctgacctaccagttcgagccgggcagcgacgcggacggcgtgaccgtccacatc
ccgctgccggtgctcaaccaggtcaccgcggagggcttcgactggcagatccccggcctg
cgggaggagctggtcaccgcgtacatcaagtcgctgcccaaggcgatccggcgcaacttc
gtgccggccccggacttcgccaaggcggccctgcgccaggtgaaggaccgccaggagccc
ttgctgccgtccctggagcacgccctgaagcgcctgacggccgtcacggtgccgccggag
gcctgggacgacgagcgggtgccggaacacctcaaggtgaccttccgggtggtggacggc
aagcgcaggctcgccgagtccaaggacctggaggagctgcggctgaagctcaagcccaag
ctcaaggagacgctctcctctgcagcctccggcaagggcatcgagcagagcggcctgacc
gcctggccggccgggctgccggtgctccagcgcaccttcgagcagcgctcgcgcggccat
tcgctgcgcgcctacccggcgctggtggacgagggctcctcggtgggcgtgaagctgttc
gacaccccggaggcccaggcccacgcgatgtgggaggggacgcgccgactgctgatgctg
accaccacctccccggccaagtcgatccagggccggctgggcaaccaggcgaagctggcg
ctctcgcacagcccgcacggctcgatcaacgccctgttcgaggacgtcgtctcggccgcg
acggaccggctgatggccctggccggcggcccggcctgggacgaggcggccttcggcaag
ctgcacgacaaggtgcgggcggacctgtacgacctgtccgcggacaccacgctgaagacg
gccaccgcgctgatcgccttccacaaggcctcgacccggctgaagtcggtgagcagcccg
gtgctgctgaacgcggtgaacgacgtccggctgcacctggcctcgctggtgcacccgggc
ttcgtgacggccaccggctggcagcggctgcccgacctcaagcgctacctgctggcggtg
gaccgccggctggaggcgctgcccaaccacccgcagcgggacgcccagcagctgctgaag
gtccagcaggtgcagcaggcgtacggggagctgctggcggccgtaccgcccgggcggcag
ccctccgaggaggtgcgggcgatccgctggatgatcgaggagctgcgggtcagcttcttc
gcccagtcgctgggcacgccgagcccggtctcggagaagcggatcatgaaggcgatggag
gcggcccgggcgaccctgtga
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