Streptomyces viridifaciens: CP971_19510
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Entry
CP971_19510 CDS
T06960
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
svr
Streptomyces viridifaciens
Pathway
svr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
svr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CP971_19510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svr03021
]
CP971_19510
03400 DNA repair and recombination proteins [BR:
svr03400
]
CP971_19510
Enzymes [BR:
svr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CP971_19510
Transcription machinery [BR:
svr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CP971_19510
DNA repair and recombination proteins [BR:
svr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CP971_19510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
TarH
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QEV01143
LinkDB
All DBs
Position
4431822..4435715
Genome browser
AA seq
1297 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDDERRQRDLPSLEAHVSVERQQIENRRDADLEARAKKAETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQRELDRLDEVWARFKNLKVQDLEGDELL
YRELRDRFGTYFSGSMGAAALKDRLETFDLAEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNKPNGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTSDRDNVKGAGR
TFSSTAEAIMAFDARELDVQAPIELRLGAGTVPPRGWTPPVDEEGRSSWFEGEPFRLNTT
LGRALFNELLPEDYPFVDYEVGKKQLSAIVNDLAERYPKVTVAATLDNLKAAGFHWSTRS
GVTVSISDVIVPPSKPQILEGFEAKAEKVQKQYERGLITNDERKQELVGIWTQATNEVAD
AMAANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLSVL
EYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLSIGSVGAD
GVLRKADDVETSVYARMLAEDITVDGKLLATANTDLGDVLIDELIRHGVGEVKTRSILTC
ESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQG
LPRVVELFEARTPKGVAPISEAAGRVRIEDTEKTRKLVVTPDDGSDEIAYPVSKRVKLLV
SEGEAVEVGQKLTMGATNPHDVLRIMGQRAVQVHLVAEVQKVYNSQGVSIHDKHIEIIIR
QMLRRVTIIESGDAELLPGELVERGRFEQENRRVVAEGGHPASGRPQLMGITKASLATES
WLSAASFQETTRVLTDAAIHAKSDPLLGLKENVILGKLIPAGTGLPRYRNIRVEPTEEAK
AAMYSAVGYDDYDLSPFGAGSGQAVPLDDYDYGPYTG
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgacgtcaacttcttcgacgagctccgcatcggcctggccaccgccgacgacatc
cgccagtggtcgcacggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
cccgaaaaggacggcctcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgccccg
gtcacccacatctggtacttcaagggtgtgccgtcccgcctcggctacctgctcgacctg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacctgggtcgac
gacgagcgccgccagcgcgacctcccgtccctggaggcgcacgtctcggtcgagcgccag
cagatcgagaaccgccgcgacgccgacctcgaggcccgcgccaagaaggccgagaccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgagggc
gccgagcgcgagatgaagcagctgcgcgaccgtgcgcagcgcgagctcgaccgcctcgac
gaggtgtgggcccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacctacttctccggctcgatgggcgcggcggcc
ctcaaggaccgcctcgagaccttcgacctggcggaggaggccgagcgcctccgcgagatc
atccgcaccggcaagggccagaagaagacccgtgcgctgaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacaagccgaacggcatggtcctggactgcgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgtttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgaagcgcctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggtccgggcaaccgcccgctgaag
tccctcagcgacatgctgaagggcaagcagggtcgtttccgccagaacctgctcggcaag
cgagtcgactactcggcccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgtgcccgc
ccggtcgtgtgggacgtgctcgaagaggtcatcgccgagcacccggtcctgctgaaccgt
gcgcccaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccggccgacggtcgccccgtcaccatgccgacccaggac
atggtgctcggtctgttcttcctgacctcggaccgcgacaacgtgaagggcgccggccgc
accttctcgtcgacggccgaggcgatcatggccttcgacgcccgcgagctggacgtccag
gccccgatcgagctgcgcctcggcgccggcaccgtcccgccgcgcggctggaccccgccg
gtggacgaggagggccggtccagctggttcgagggcgagcccttccgcctgaacaccacc
ctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgactacgag
gtgggcaagaagcagctctccgcgatcgtcaacgacctggcggagcgctaccccaaggtc
accgtcgcggcgaccctggacaacctgaaggcggccggcttccactggtcgacccgttcc
ggtgtcaccgtctcgatctcggacgtcatcgtcccgccgagcaagccccagatcctggag
ggcttcgaggcgaaggcggagaaggtccagaagcagtacgagcgcggtctgatcaccaac
gacgagcgcaagcaggagctcgtcggcatctggacccaggcgaccaacgaggtcgcggac
gccatggccgcgaacttcccgaagacgaaccccatcttcatgatggtcgactcgggtgcc
cgtggaaacatgatgcagatgcgccagatcgccggtatgcgtggtctggtgtcgaacgcc
aagaacgagaccatcccgcgacccatcaaggcgtcgttccgtgagggtctgtccgtgctg
gagtacttcatctccacccacggtgcccgtaagggtctggccgacaccgccctccgtacc
gccgactccggctacctcacccgtcgtctggtcgacgtctcccaggacgtcatcatccgc
gaggaggactgcggcaccgagcgcggcctgaagctgtcgatcggctccgtgggcgccgac
ggcgtgctgcgcaaggccgacgacgtcgagaccagcgtgtacgcccgcatgctcgccgag
gacatcaccgtcgacggcaagctgctggccaccgccaacaccgacctcggcgacgtcctg
atcgacgagctgatccgccacggtgtgggcgaggtcaagacccgctcgatcctgacctgt
gagtcggccgtcggcacctgcgccatgtgctacgggcgctcgctggccaccggcaagctg
gtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagcccggtacc
cagctgaccatgcgtaccttccacaccggtggtgtggccggtgacgacatcacccagggt
ctgccgcgtgtcgtcgagctcttcgaggcccgcacccccaagggtgtggccccgatctcg
gaggccgccggccgggtccgcatcgaggacaccgagaagacccgcaagctggtcgtcacg
ccggacgacggcagcgacgagatcgcctacccggtctcgaagcgcgtcaagctgctggtc
agcgagggcgaggcggtcgaggtcggccagaagctgaccatgggtgccaccaacccgcac
gacgtgctgcggatcatgggccagcgtgccgtccaggtccacctggtcgccgaggtccag
aaggtctacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatcatccgg
cagatgctccgccgcgtgacgatcatcgagtcgggcgacgccgagctgctcccgggcgag
ctcgtcgagcgcggccgcttcgagcaggagaaccgtcgcgtggtcgccgagggcggtcac
cccgcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggccaccgagtcc
tggctgtcggccgcctccttccaggagacgacccgggtcctcaccgacgcggcgatccac
gccaagtcggacccgctgctgggcctcaaggagaacgtcatcctcggtaagctcatcccg
gccggtacgggtctgccccgctaccgcaacatccgggtcgagccgaccgaggaggccaag
gccgcgatgtactcggccgtcggctacgacgactacgacctgtcgcccttcggcgccggc
tccggccaggcggttccgctggacgactacgactacggcccgtacaccggctga
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