Setaria viridis (green foxtail): 117833132
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Entry
117833132 CDS
T07951
Name
(RefSeq) uncharacterized protein
KO
K14315
nucleoporin NDC1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117833132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117833132
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117833132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Lambda_tail_I
Motif
Other DBs
NCBI-GeneID:
117833132
NCBI-ProteinID:
XP_034568423
LinkDB
All DBs
Position
1:34205999..34210475
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AA seq
498 aa
AA seq
DB search
MDRAPPRGAPRDAVGQRWLAVFAFQAVLSAAASALHLAASPRGRRHPLLGVPAGLLLALH
PLLACAAAGLLALALLLTASPHPRPPPLQRRTLATALLAAAGALFVGAAAAILPEDAGWA
AVAGLGFRGAVLGAVFAAHYFGRRRWLLQFPVVQRPLFYGLKMGLLPSGKKSLKLSLQAF
CLSFALILLLPWQFRNGGSIGSQILTQISIFIVTAGVSFCLEISHHFVQVVHTRRCSFAP
PQSTAAAETNPTEFILETLEQSDPRSLIQYLAYQDLCVVSECNLEPWRRAAFFEESGETY
KRIVTACLKPLEGFSSKVAQALEYDPELISQQYVLINAFDDSQICTWCARTLAGLTARSR
QEDRYGVAQLTGCNAAVMTTLLSALVAIEACLGKKTNPLPVHLGPESIRWAQFSTVRTGT
GTAIASKQVGLHKKACAMADVLRTSVYQIVSAFIDDLRANAKPASLEKNWISEGRKPVYG
SQAVLVQKLSLFIEYRAV
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggaccgggccccgccgcgcggcgcgccccgcgacgccgtgggccagcggtggctcgcc
gtcttcgccttccaggccgtcctatcggccgccgcctcggcgctccacctcgcggcgtcc
ccgcgcggccgccgccacccgctcctcggcgtccccgccggcctcctcctcgcgctccac
ccgctcctggcctgcgccgccgcggggctcctcgcgctggcgctcctcctcaccgcgtcc
ccgcacccgcgccctcccccgctgcagcggcgcacgctagcgaccgccctcctcgccgcg
gccggcgcgctcttcgtcggcgccgccgcggcgatcctccccgaggacgccgggtgggcg
gcggtcgctgggctcggattccgcggggccgtgctgggtgccgtcttcgccgcgcactac
tttggccgtcggaggtggttgctccagttccccgtcgtgcagcggcctttattctacgga
ttgaagatgggacttctgccatctgggaaaaagtccctaaaattgtcgcttcaggccttc
tgcctttcatttgccctgattttactccttccttggcaattcagaaatggaggctctatt
ggaagccaaatactcactcagatcagcatttttatagtgactgctggtgtttccttctgt
ttggaaataagccatcattttgtccaggtcgtacatacaaggaggtgcagttttgctcca
cctcagagcactgccgctgctgagactaatcccactgaatttatcctggaaacattggaa
caaagtgatccacgatcattaatacaatatcttgcttaccaagatttgtgtgtggtatct
gagtgtaacttggaaccttggcgccgagctgccttctttgaagaatctggtgaaacatat
aaaagaattgtgacagcttgtttgaagccacttgaggggttttcttcaaaagtcgctcaa
gcccttgaatacgatccagaattgatatcgcaacagtacgtactcatcaacgcatttgat
gattctcagatatgcacgtggtgtgctcggacattggcaggattaaccgcgcgctcacgc
caggaggatcgttatggagttgctcagctcactggctgcaatgctgccgtgatgactaca
ttgctatctgctctagtggcaattgaggcatgtttaggaaagaaaacgaacccactgcct
gtgcacttgggtcctgaaagcattaggtgggctcagttctccacagtacgaactggcact
ggaactgcaattgcaagcaagcaagttggtttgcacaagaaagcttgtgccatggcggat
gttcttaggacttcagtttatcaaatagtttctgcattcatcgatgacctgcgagcaaat
gcaaaaccagcaagtttggagaagaattggatcagtgaagggagaaagcctgtatatggt
tcccaagcagtgttggttcagaagttgagtttgtttattgagtaccgtgctgtctga
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