Setaria viridis (green foxtail): 117833166
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Entry
117833166 CDS
T07951
Name
(RefSeq) LOW QUALITY PROTEIN: probable rhamnogalacturonate lyase C
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
117833166
Enzymes [BR:
svs01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
117833166
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
Motif
Other DBs
NCBI-GeneID:
117833166
NCBI-ProteinID:
XP_034568476
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Position
8:355606..360158
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AA seq
711 aa
AA seq
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MSLLLATRPSRPTSSSSHASSVQGALTSAPRAYHDCPASACRPAGLGLPLLQISYLSDPF
LQSLTSSSSSSSSSIAICACIQVLVDNGVVQVTLSKPQGHITAVGYNGERNLLHYAGQEN
SGGYWDVVWNCPGSDHPRGMIDMLDSTEFKVISSSQEQVELSFRSTYNPSCQDSVRLNID
KRLVMLKGSSGFYCYAIFEHTSNWPAMNISEARLAFKLNTDKFNYMAISDDIQRYMPSAA
DRDEPRGTALAYKEAVLLVNPEEPQFKGEVDDKYQYSLDNKDNVVHGWISSNHPNPMGFW
VITPSNEFKSGGPMKRELTSHVGPTSLTMFLGTHYIGDDIVLNIGGGEYWKKVLGPVFIY
LNSSPKHGDLRALWQDAKAQAQTEVSKWPYSFPKSPDFAKAGKRGSVTGRLMVRDRFMRK
DDMPTRMAYIGLAAPGQPGSWATECKGYQFWTTATSCGSFTIGNVRAGVYNLYAWVPGVL
GDYMYTCAVTVTPGCAIDLGDLVFLPPRSGPTLWEIGVPDGTAAEFFIPDVDPRYANRLF
LHREKXALHLXWLTEAYGTRLYPDSDQSLTVGQSDHSKDWFFAHVTRKLGNGNVPATRQI
RFNLDHVVADGTYTLRIALAAAQMSRLQVHVNGGGLFTTPEFGGGNAIARHGIHGVQWSF
EFPIRGYLLQEGENRLSITQSRAFGEFLGVMYDYIRLEGPPGSWRDPTRRP
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctactgctagctacgagaccttcccgtccaacgtcgtcgtcaagtcatgcatcg
tccgttcagggcgcactaacaagtgcaccgcgcgcgtaccacgactgcccggcgtctgcg
tgccggccggccgggcttggcctgcctctactacaaatctcttacctctccgatcctttt
cttcaatctcttacctcttcttcttcttcctcctcctcctcgatcgccatttgtgcatgc
atacaggtgctcgtggacaatggcgtggtgcaggtgacgctgtccaaaccgcagggccat
atcaccgccgtcggctacaacggcgagcgcaacctgctgcactacgccggacaggagaac
tcgggagggtactgggatgtggtgtggaactgtcccggctccgatcacccaagagggatg
atcgacatgttggacagtacagagttcaaggtcatatcctcaagccaggagcaagtggag
ctttctttcaggagtacatataacccatcatgtcaagatagtgttcggctcaacattgac
aagagacttgtgatgctgaaaggcagctctgggttctactgctacgccatctttgagcac
accagcaactggcctgccatgaacatctcagaggctcggctcgctttcaaactaaacacg
gacaagttcaactacatggcgatttcagacgacatacaaagatacatgcccagcgcggca
gacagagacgagcctcgaggcactgcactggcctacaaggaggctgttcttctcgttaac
cctgaggagccacagttcaagggagaggtggatgacaagtaccagtactcgctggacaac
aaggacaacgtcgtccatggatggatcagcagcaatcaccccaaccccatgggcttctgg
gtcatcacccccagcaacgagttcaagagcggcggccccatgaagagggaactcacctcc
cacgtcggacccacctccctcactatgtttctgggaacgcattacattggggatgacatt
gtcctcaacatcggcggtggcgagtattggaagaaggtgttggggccagtcttcatctac
ctcaactcgagcccgaaacacggtgatctccgggctctctggcaggatgccaaggcgcag
gcgcaaaccgaagtcagcaagtggccgtacagcttccctaaatcaccggacttcgccaag
gccggcaagaggggctccgtcaccggaaggctcatggtcagagacaggttcatgaggaag
gacgacatgcctacccggatggcgtacatcggcctcgccgcgcccgggcagcctggctcc
tgggcgacagagtgcaagggttatcagttctggacgacggccacgtcctgcggcagtttc
accattggcaatgtccgggcaggggtgtacaacctctacgcatgggtccccggggttctt
ggagactacatgtacacttgtgctgtgaccgtaacgccaggttgcgccatcgacctcggt
gatctcgtgttcttgcctccaagatcaggcccgacgctgtgggagatcggagtcccggac
gggaccgccgcggagttcttcattcctgacgtcgaccccagatacgccaaccggctgttt
ctgcacagggaaaagtaagctcttcatctttgatggcttacggaagcatatggcacgagg
ctgtaccctgacagcgatcagagcctcacggtcggtcagagcgaccactccaaggactgg
ttctttgcgcatgtcacaaggaagttaggcaatggcaacgtgccagcaacgcgtcagata
aggttcaacctggaccacgtcgtcgcggacggcacctacacgctgcgcatcgcccttgca
gctgctcagatgtccagactgcaggtgcacgtgaacgggggcgggttgttcacgacgccg
gagttcggcggcggcaacgccatcgcgcggcacggcatccacggcgtgcagtggagcttc
gagttcccaatcagggggtacctgctgcaggaaggcgagaacaggttgagcatcacgcag
agcagggcctttggcgagttcttgggggtcatgtacgactacatccgcctggaaggacct
cccggatcctggcgagaccccacgcgacggccatga
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