Setaria viridis (green foxtail): 117833304
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Entry
117833304 CDS
T07951
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03030
DNA replication
svs03410
Base excision repair
svs03420
Nucleotide excision repair
svs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117833304
03410 Base excision repair
117833304
03420 Nucleotide excision repair
117833304
03430 Mismatch repair
117833304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svs03032
]
117833304
03400 DNA repair and recombination proteins [BR:
svs03400
]
117833304
DNA replication proteins [BR:
svs03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
117833304
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
117833304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
AAA_22
AAA_30
RCF1-5-like_lid
AAA_19
RuvB_N
AAA_assoc_2
nSTAND3
AAA_5
Gp44_lid
PTCB-BRCT
BRCT_2
AAA_16
RsgA_GTPase
AAA_18
AAA_24
Sigma54_activ_2
AAA_17
AAA_14
RNA_helicase
NTPase_1
AAA_33
AAA_2
Mg_chelatase
ABC_tran
TsaE
Zeta_toxin
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
117833304
NCBI-ProteinID:
XP_034568636
LinkDB
All DBs
Position
8:30590520..30603195
Genome browser
AA seq
988 aa
AA seq
DB search
MSSDIRKWFMRTQDKGGASGAVKPSGPAAAEKKPVLSIPEKKQAPPSLASCDHDPSARRK
TSKYFGSKTEKDSDVEMADATAGKSTEKNAAKRKLQKGSNELKDDTKPLPAKKMSKDDED
DNDDFVSPSKKKTPVKPPPSKKPKVESNVEAPGRTTGTDDGEEEDKMDEDAKTPSKGAGR
GRGRGGRGGAAPGGRGRGGGGRGFMNFGERKDPPHKGEKEVPEGAPDCLSGLTFVISGTL
DSLEREEATDLIKRYGGRVTGSISKKTSYLLADEDIGGVKSNKAKDLGVPFLTEDGLFDL
IRKSKPAKAPVDGHQSSNGSEKLQKLQTKSSPAKVEKRAEASPVGKSIASKSNVADASAE
NRKAKNIDRGSMQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWDTQFLHSGQKGKGKKQA
DNGAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNS
VKELISNATLNYSDNRLKHPKAVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICND
RYSQKLKSLVNYCLMLNFRKPTKQQMSKRLMEIAKKEGIQAQENAMEELAERVHGDIRMA
LNHLQYMSLSQSVVKYDDIRERLNSSAKDEDISPFTAVDKLFGFNGGRLRMDERIDFGMS
DPDLVPLIIQENYINYRPNTIGKDESGVKRMNALARAAESIADGDLVNVQIRRYRQWQLS
QAACFASSIVPAAFMHGNREILEAGERNFNRFGGWLGKYSTTNKNRRLLEDAHSHILASQ
QANLDRETLRLDYLTLLLRQLTDPLKTMPKDEAVQKVVEFMDTYSLSQEDFDTIVEISKF
KGHPSPMDGIQPAVKSALTKAYKQGSSSRVVRAADLINIPGMKKPLKKRVAAILEPVEES
LPDENGVASAEADEEDSSDTENNDELVPSDSMPKLDLQSDKKKGIQVQLDLKSNGNGSIG
KKTPASRSRAAPGSGGKSAGGSAGKRKR
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggacatccggaaatggttcatgaggacgcaggacaagggtggggcctccggg
gccgtgaagccctcagggccggctgcggcggagaagaagccggtgctcagcattccggag
aagaagcaggcaccaccttcgttggcgtcctgcgaccatgatccttctgctagaaggaag
acaagcaagtactttgggtcaaaaactgaaaaggactcggatgttgaaatggcagatgcc
actgcaggaaagagtactgagaagaatgcggctaaaagaaaacttcagaaaggtagcaat
gaactcaaggatgacacaaagcctttgccagcaaagaaaatgtctaaggatgatgaagac
gacaatgacgactttgtgtcaccttcaaaaaagaaaactccagtgaagccaccgccatca
aagaagcctaaggttgaatctaatgttgaagcccctggaaggactactggtactgatgat
ggtgaggaggaggacaagatggatgaagatgccaagactccttcgaaaggagctggaaga
ggaaggggaaggggaggaagaggaggagcagcccctgggggtagaggtagaggagggggt
gggagaggtttcatgaattttggtgagaggaaggatccccctcacaaaggagaaaaggag
gtcccagagggtgcccctgactgtttatctggtctgacatttgtcattagtggtaccctt
gacagtcttgaacgtgaggaagcgactgatctaattaagcgttatggaggccgtgtgact
ggctctattagtaaaaagacgagttacttattggctgatgaagacattggtggagtgaaa
tctaacaaagcaaaagatctgggtgtcccattcttgaccgaagatggtttatttgattta
atccggaaatcgaagcctgcaaaggctcctgtagacggacatcaaagcagcaacggttct
gaaaagctgcagaaattacagacaaagagctctccagctaaagttgagaaacgagctgaa
gcaagtcctgtgggcaaaagtattgcttcaaagagtaatgtcgcagatgcctctgctgaa
aacagaaaggccaagaatattgaccgtggttctatgcaatggacagaaaaatatcggccg
aaagttccgaatgacatagttggcaaccaatcaatggttaaacaacttcatgattggttg
aaaagttgggacacacaattccttcattctgggcaaaagggcaagggaaagaagcaagct
gataacggagccaaaaaggctgtgttgttgagtggacctccgggtattggcaagactaca
actgcaaaagttgtcagtcagatgctaggattgcaggccattgaggtaaatgcaagtgat
agccgtggtaaagcagactccaagattgagaaaggtgttggggggagcacatcaaattcc
gtcaaagagcttatcagcaatgcaactctgaattatagtgacaatcggttaaagcatcct
aaagctgtactaatcatggatgaagttgatggtatgtctgctggagatagaggtggtgtt
gctgatcttattgctagcatcaagatatccaagattcctataatctgcatctgtaatgac
cgttatagccagaaattgaagagccttgtcaattactgcctgatgctcaacttcagaaaa
ccaacaaaacagcagatgagtaagagattgatggaaattgccaaaaaggaaggtattcaa
gctcaagagaatgcaatggaagagcttgctgaaagagttcatggggatattcgcatggca
cttaaccatttgcagtatatgagcctctcccaatctgtggtcaaatatgatgatatacga
gagcgacttaatagcagtgcaaaggatgaagatatttctcctttcacagctgttgacaaa
ttgtttggtttcaatggtgggagattaaggatggatgagagaattgattttggcatgagt
gatcctgatttagttccccttattatccaggaaaattatatcaattatcgacctaacacc
atcgggaaggatgaaagtggagttaaaagaatgaacgctcttgcccgtgctgctgagtct
atagcggatggtgatcttgttaatgtacaaataagaagatatcgacagtggcagttgtcg
caagctgcttgttttgcttcatctatagtacctgccgcttttatgcatgggaacagggaa
atccttgaagcgggtgagcgaaactttaataggtttggtgggtggttgggtaagtactca
acaactaacaaaaacagaaggcttctggaagatgctcacagtcatattcttgcgtcccaa
caggcaaacttggacagggagacattgaggttggattatcttactcttctcttgagacag
ctgactgacccactgaaaacaatgccaaaggatgaagctgttcaaaaggtggtggagttt
atggacacctactctctcagccaggaagactttgacacgattgtggaaatatccaaattt
aagggccatccaagtcctatggatgggattcaacctgccgttaaaagtgccttgacaaag
gcatacaaacaaggaagtagttctcgtgttgttcgagcagcagatctaataaatattcca
ggcatgaagaaacctctaaagaaacgagtagcagcaatcttggagccagtagaagagagc
ctgcctgatgaaaatggtgtagcatcagctgaagctgatgaagaggattcttctgatact
gaaaataatgatgaacttgtgcctagtgactcaatgccaaaactggacttgcagagtgat
aagaagaaaggaattcaagtccagcttgacctcaagagcaacggaaacggctccattggg
aagaagacacctgcttccagatcaagagcagctcctgggtccggtgggaagtctgcggga
ggctcagctgggaagaggaagaggtaa
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