Setaria viridis (green foxtail): 117833306
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Entry
117833306 CDS
T07951
Name
(RefSeq) prolycopene isomerase, chloroplastic
KO
K09835
prolycopene isomerase [EC:
5.2.1.13
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs00906
Carotenoid biosynthesis
svs01100
Metabolic pathways
svs01110
Biosynthesis of secondary metabolites
Module
svs_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
117833306
Enzymes [BR:
svs01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.13 prolycopene isomerase
117833306
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Motif
Pfam:
Amino_oxidase
NAD_binding_8
DAO
FAD_binding_2
FAD_oxidored
HI0933_like
GIDA
Pyr_redox_2
Thi4
FAD_binding_3
GMC_oxred_N
Pyr_redox_3
Motif
Other DBs
NCBI-GeneID:
117833306
NCBI-ProteinID:
XP_034568643
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Position
8:30625095..30629834
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AA seq
592 aa
AA seq
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MPPLAARVHAPLLLAPAVPAARPAALLRASSGPRGGVGTGVGVRQGALASERPPAVAVAE
EAGEDAGGGEGEGPYDTIVIGSGIGGLVAATQLAAKGARVLVLEKYLIPGGSSGYYRRDG
FTFDVGSSVMFGFSDKGNLNLITQALEAVGRKMEVLPDPSTVHFHLPGDLSVLVHRKYED
FINELISKFPHEKEGILKFYGICWKIFNSLNSLELKSLEEPLYLFGQFFQKPLECLTLAY
YLPQNAGDIARQFIKDQELLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVG
GVGGIATSLADGLVEKGSEIRYKANVTNVLLENGKAVGVRLSNGKEFFAKTVISNATRWD
TFGKLLKDKELPEEEKNFQKNYVKAPSFLSIHMGVKASVLPAGTDCHHFVLEDDWNNLEK
PYGSIFLSIPTVLDPSLAPEGHHILHIFTTAGIEDWEGLSRKEYEEKKEVVANEIIRRLE
KKLFPGLQDSIVLKEVGSPKTHRRFLARNDGTYGPMPRGKPKGLLAMPFNTTSIDGLYCV
GDSCFPGQGVIAVAFSGIMCAHRVAADVGLEQKSPVLDAGLLGLLRWLRTLA
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgctcgccgcgcgcgtgcacgccccgctcctcctcgcccccgccgtccccgcg
gcccggcccgccgcgcttctccgtgcctcgagcgggccccgcggcggcgtcggcactggc
gttggcgtcaggcaaggcgcgctagcctcggagaggccgccggcggtggcggtggcggag
gaggcgggcgaggatgcgggaggaggggagggagagggtccctacgacacgatcgtgatc
gggtcggggatcggcgggctggtggcggcgacgcagctggcggcgaagggcgcgcgggtg
ctggtcctcgagaagtacctcatcccggggggaagctccgggtactaccgccgcgacggc
ttcaccttcgacgtcggctcctccgtcatgttcggcttctccgacaagggtaacttgaat
ttgatcacacaagcactggaagcagttgggcgtaagatggaagtcctacctgacccttct
acggtccatttccacctacctggggatctctctgtccttgtgcatagaaagtatgaagac
ttcatcaatgaactgatcagcaaattccctcatgagaaggaagggatccttaagttctac
ggaatatgttggaagatcttcaattcattaaattcattggagctgaagtccctagaagag
cccctttatcttttcgggcaatttttccagaagcctctagaatgcttaactctagcttat
tatttaccgcagaatgctggggatatcgctcgccagttcataaaagatcaggagctactc
tccttcatagatgctgagtgttttattgtgagcacagtcaatgccttgcaaacacccatg
ataaacgcaagcatggtcttgtgcgataggcactttggggggattaattatccagttggt
ggtgttggtggtattgcgacatccctggcagatggccttgttgaaaagggcagtgaaatc
cgttacaaggcgaatgtaaccaacgttcttcttgaaaatggaaaagctgttggtgtgagg
ttatcaaatgggaaggaattctttgctaaaacggtgatatcaaatgccacaagatgggac
acttttggaaagctgttgaaagacaaagagcttccagaagaggagaaaaacttccaaaag
aattatgttaaggcgccatccttcctgtcaattcatatgggtgtcaaagcctcagtcttg
cctgctggcactgactgccatcattttgtacttgaggatgattggaataatttggagaag
ccttatggaagcatatttcttagtatccccacagttcttgatccatcattagctcccgaa
ggacatcatatacttcatatatttactaccgcaggcatagaagattgggagggtctttcg
aggaaggaatatgaagagaaaaaagaggtagtggccaatgagattatcagaaggcttgaa
aagaagttgtttcctggtcttcaagattcaatagtcctcaaagaggtaggctcaccaaaa
actcaccgaagatttcttgctcgaaatgatggtacatatggaccgatgccacggggtaaa
ccaaagggcttactggcaatgccttttaacactacatcaatagatggcctttactgtgtt
ggcgacagctgttttcctgggcaaggtgtcattgctgtagcattctcagggatcatgtgt
gctcaccgagttgcagcagatgttggactagagcaaaaatctccagttctagatgctggt
cttcttgggctactcagatggttgagaacacttgcatag
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