Setaria viridis (green foxtail): 117833360
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Entry
117833360 CDS
T07951
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117833360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117833360
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117833360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
117833360
NCBI-ProteinID:
XP_034568712
LinkDB
All DBs
Position
8:36265254..36269210
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AA seq
461 aa
AA seq
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MEADAGKLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVFADPAVA
EQVIMEKHMIDGRMVEAKKAVPRDDQHALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEA
DFRKYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALFKTFHELNGKMVEVKR
AVPKELSPGPSMRSPVGGFNYVMGRANILNGYTQGYNPSPVGGYGMRMDARFGLLSGGRS
GYPSFGGSYGIGMNFDPGMNPGIGGGSSFNNSVQYGRQLNPYYSGNSGRFNSSVGYGGVN
DNNGSVFNSLARNLWGNSGLNYSSNSASSNTFVSSGNGGLSGIGNNNVNWGNPPVPAQGA
SGGSGYGTGNFGYGSSENNFGLGSSAYGRNAGSGGVNTFNQSTNGYARNFGDSSAPGGSI
YGDTTWRSGSSELDGTSPFGYGLGNSASDVTAKSSAGYMGH
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggacgccgggaagctgttcatcggcggcatctcgtgggacaccaacgaggac
cgcctccgggagtacttcgacaagtatggggaggtggtggaggccgtcatcatgcgcgac
cgggccaccggccgcgctcgaggcttcggcttcatcgtgttcgccgaccccgccgtcgcc
gagcaggtcatcatggagaagcacatgatcgacggccggatggtggaggcgaagaaagct
gtccccagggatgatcagcatgctctcagtaagagtggtggcagtgctcatggatcaccg
gggcctagccgcacgaagaagatattcgttggtggtttggcttccaccgtgaccgaggcg
gacttcaggaagtattttgaacagttcgggacgatcactgatgttgtcgtgatgtatgac
cacaacacacagcgtcctagagggtttgggttcatcacctatgattcagaagatgccgtg
gacaaggcattgttcaagacgttccatgaactgaatggtaagatggttgaggtcaagcgt
gctgttcctaaggaactatcacctggacctagcatgcgctctcctgtaggtggattcaac
tatgtcatgggtagagccaatatcctcaatggatatacccaaggttacaatccgagccca
gtgggtggctacgggatgaggatggatgcaaggtttgggcttctgtcaggcgggcgcagt
ggttatccatcttttggtggtagttacggaattggtatgaattttgacccagggatgaac
ccaggtattggaggtggctctagtttcaacaatagtgtccagtatggacggcagcttaat
ccatactacagtggaaattctggtagattcaatagcagcgttggctatggtggagtgaat
gataataatggatcagtgtttaactcactggctcgtaatctatggggtaattcggggctt
aattactcttccaactccgcaagctctaataccttcgtgtcatctggaaatgggggcctt
agtggaattgggaacaacaatgtgaactggggaaaccctcctgtgcctgctcaaggtgct
agtggtggctctggttatggtactggaaactttggctatggatccagtgaaaacaacttt
ggtctgggttccagtgcctatggaaggaatgctggatcaggtggtgtcaataccttcaac
caatcaaccaatgggtatgcaaggaactttggagattcatcagcacctggtggctctatc
tatggagacacaacatggagatctggatcttccgagcttgatggaaccagcccatttggt
tatgggcttggaaattcagcttcagatgttacagcaaagagctcagcaggttacatgggg
cattga
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