Setaria viridis (green foxtail): 117834036
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Entry
117834036 CDS
T07951
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40 isoform X2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117834036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117834036
03009 Ribosome biogenesis [BR:
svs03009
]
117834036
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117834036
Spliceosome [BR:
svs03041
]
Complex A
U1 snRNP components
U1 related factors
117834036
Complex B
117834036
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
Pre-60S particles
Helicases
117834036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
117834036
NCBI-ProteinID:
XP_034569541
LinkDB
All DBs
Position
8:40324653..40331839
Genome browser
AA seq
1356 aa
AA seq
DB search
MAAQEAAADALGPRFAPDDPTLPAPWKALIDGATLYYWNPETNVTQYEKPGAAAAAPPLP
AGPPPTIPAQVPEPAPGAFSQPGMQFGQAGQGVHQERPGQATYPQAGQLGQQQQQQTQQL
AQQQPFQHVPQQQPSFQQALYQQQQPHMPNQPPQYPNPHPQHMPYQQGPYNMQPQQQQQG
PPYPYQADKQPQMPQPAYHQTQQPPMPQAAYNQGQQPPMPQSSYSQGQQPAIPQSAYNQA
QPPQMPHGAYNQSQQPQGMRIPQNQVQHPQQSMSFHHPAQAPQLPQVSQSQGLQMPPQQG
QLLHGLQFSQHGKQPLSHGQQSPLLKDDDSGGHEGKRTGFSLPLSQQRGQAPISNQQLPS
SHQHPGAVNQPNVPGVGGPLYPAKHLHGGSSPAETNNMGFVNSPAQMHQGAVDTNYRQQP
VSSHAVPNHVGPSPVRPPMGFEMGNSDCHFERDDPHSYGRFDGANALQQQPKLAAIPPSQ
NPLGMRNGPPYPRPDNFGGYNMAPPHPVPNPHNHGPLPIGASMRPPSTMFAPPDFTGIPS
ADAYRQHHEVTAMGENVPAPFMTFEATGFPPEILREIHAAGFSNPTPIQAQTWPVALQNR
DIVAIAKTGSGKTLGYLIPAFIHLRRCQNNPMLGPTVLVLAPTRELASQIQDEVVKFGRS
SRVSCTCLYGGASKGPQLRELERGADIVVATPGRLNDILEMKKISLHQVSLLVLDEADRM
LDMGFEPQIRKIVDEIPPARQTLMYTATWPKEVTKIAGDLLRDPVQVNIGSIDELVANKS
ITQYVEVVPPMDKQRRLEQILRDQERGSKIIIFCSTKKMCDQLARGIGRSFNAVSIHGDK
SQAERDNVLNQFRTGRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRA
GATGVSYTFISEQDWKHAGDLVKLLEGANQHVPPQLLDMAARGATGGPRNQATGMSRWDG
PGGGRFEPAVGGPVGYGGVREGPGGFGSREGPGVFSSLEGPGGFGGRESPGGFAGREGPD
GFGGRDGFGGREGPGGFGGREGPGGFGGRKGPGGFGGRDGPGSSGFGGRGGRGSGGRGGA
SPGGFGGRGGRGDSPGFGGRGRGDFSGFGGRGRGDSPGFGGRGRGDFSGGRGGRGRGFGG
RGRSDRGPHDRYVSDGRGRYDNRRGFGDKDRDRSYSRSPDRGRSRGYDRRSDSRSLSRSR
SRSRSWSRSRSRSRSWSRSRSRSGSHSRSRSRSRDHGAAPERRPRARSGFDVLPPATGAA
GPALTGPAPVPVPGSAIPPVPSLPHAQSLTDTSAMSPMSPGGLVQPAAAPLNGMNDGNFS
GPHAGQPFHGTDAAIPSFPAAETFPGSVAQQAAPDV
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcaggaggccgccgcagatgcattgggccctcggtttgcccctgatgacccg
actctccctgcgccctggaaagcgctgatcgacggggcaacgctgtactactggaacccg
gagacgaatgtgacccagtacgagaagccgggtgctgcagcagcagcaccccccttgccg
gcgggtcctccgccaacgatccctgcgcaggttccggaacccgcaccaggggctttttca
cagcctggcatgcagtttggccaagctggtcagggggtgcaccaggagcgaccaggccag
gcaacttatcctcaggctggccagcttgggcagcagcagcagcagcagactcaacagctg
gcgcagcagcaaccttttcagcacgtgcctcaacagcaaccttcgtttcagcaagcgctg
tatcagcaacagcagccacacatgccaaatcagccacctcaataccccaacccgcatcct
caacacatgccgtaccagcagggtccttacaacatgcaaccccagcagcaacagcaagga
ccgccatatccgtatcaggcagacaagcagccacaaatgccgcaacctgcctaccatcaa
acacagcagccaccgatgccgcaagctgcctacaatcaaggtcagcagccaccgatgccg
caatcttcctacagtcaaggtcagcagcccgcgataccacaatctgcctacaatcaggct
caaccaccgcaaatgccacacggtgcatataaccaaagccagcagccgcaaggaatgagg
attcctcagaatcaagtgcaacaccctcaacaatctatgagctttcaccaccctgctcag
gctccacagttaccgcaagtttctcaatctcaaggacttcaaatgccccctcaacaaggc
caactgctgcatggattgcagttctctcagcatggaaaacagccactgtcacatgggcaa
caaagtccattgttgaaggatgatgattcaggaggtcatgaaggcaagaggactggcttt
tcattaccacttagtcagcagcgtggccaagctcctatttcaaaccagcagttaccttct
agtcatcaacatccaggagctgttaatcagccaaatgtacctggagtcggtgggccattg
tatcctgcaaagcatcttcatggtggatcatctccggctgagactaataacatgggtttt
gtgaactcacctgctcaaatgcatcaaggtgcagtggatacgaactaccggcaacaaccg
gttagcagccatgcagttccaaatcatgttggtccatcaccagttcgtcctccgatgggt
ttcgagatgggtaatagtgattgtcactttgaaagggatgatcctcactcctatggaagg
tttgatggagcaaatgctctccagcagcagccaaagcttgctgctatcccgccttcacaa
aatcccctgggcatgcgaaatggcccgccttatcctcggccagacaattttggtggttat
aacatggcacctccacatccggtgccaaatccacataatcatggtccattgccgattgga
gcttctatgagaccgccatcaacaatgtttgctcccccagatttcacaggcataccttca
gctgatgcataccgtcagcaccatgaagtcactgctatgggtgagaatgttcctgctcca
tttatgacttttgaggctactggattccctccagagatcctgagagagatccacgcagct
ggcttttcaaatcccactccaattcaagctcaaacatggcctgttgcactgcaaaaccgg
gacatagtagctattgccaagacagggtctggaaagacactggggtacctaattccggct
tttatacatttgaggagatgccaaaacaatccgatgttgggtcctacagtgttggtttta
gcccctactcgtgagcttgcttcacaaatacaagatgaagtagtcaagtttggtcgatca
tctagagtctcctgcacatgcctatatggtggtgcttcaaagggtcctcagctaagagaa
cttgagcgtggagcagatattgtggtagcaacaccaggacgtcttaatgatattctggag
atgaagaagattagcctccatcaggtttcattacttgtgcttgatgaggctgaccgtatg
cttgacatgggttttgagccacagatacggaagattgtggatgagattcctcctgctaga
cagactctgatgtatactgccacatggcccaaggaggttacaaaaatagcaggggattta
ctcagagatcctgtccaggtcaacattggcagcattgatgaacttgttgccaacaaatca
atcactcagtatgtggaggtggttccacctatggacaagcagcgacgcctagagcagatc
ctgagagatcaagaaaggggttcaaaaatcatcatattctgctcaactaagaaaatgtgt
gaccaacttgctcgtggcattggtcgcagttttaatgctgtaagcattcatggtgataaa
tcacaggctgaaagagataatgttctcaatcagtttcgaactggcagggctccaatattg
gtagccacagatgttgctgctcgtggacttgatatcaaagatatcagagtggtaatcaat
tatgactttccaactgggatagaggactatgtgcatcgtatagggcgtacaggaagagct
ggggcaactggagtctcatacacattcatctctgaacaagattggaaacatgctggtgat
ttggtgaaactcttggaaggtgctaaccagcatgttcctccacagctgctggacatggct
gcacgaggtgctactggaggtccaagaaaccaggctactggaatgagtcgctgggatggg
cctggtggtggtcgttttgaaccagctgttggtggccctgttggttatggtggagttagg
gagggccctggaggttttggcagtcgtgagggccctggagtcttcagcagtcttgagggc
ccaggcggatttggtggtcgagaaagcccaggcgggtttgctggcagggaaggccctgat
ggatttggcggacgggatggttttggtgggcgggagggtcctggtggctttggtggaagg
gagggtcctggtggcttcggtggcagaaagggcccaggtggctttggcggacgggatggc
cctgggtccagtggttttggaggtagaggggggcgtgggtctggtggtagaggcggagca
agccctggtggctttggtggtcgtggtggcaggggtgattctcctggttttggtgggcgt
ggcaggggtgatttttcaggttttggtgggcgtggtaggggtgattctcccggttttggt
ggacgaggtaggggagatttctctggtggacgtggtggcaggggccgtggatttggcgga
aggggacgttctgaccgaggtccacatgaccggtatgtctcagatggccggggaagatat
gataaccgtcgaggatttggcgacaaggatagggaccggagctacagccgcagcccggat
agaggcagatcacgaggctatgacagaagaagtgatagcaggagccttagtaggagcaga
agccgcagcaggagctggtcacgtagtaggagccgcagcaggagctggagccgtagtcgg
agccgcagcggcagtcatagtcgcagcaggagcaggagccgtgaccatggtgcagcacca
gaacgcaggccccgagcaaggtccggattcgatgtgctgccaccagcaactggagcagct
ggacctgctttaaccggacctgcacctgtccctgtacctggatcagcaataccccctgtt
ccttcacttccacatgcacaatcactcactgatacatctgcaatgtcgccaatgtcaccc
ggtggactggtccagccggctgctgcaccattaaacggcatgaatgatggtaacttcagc
ggtccacatgctggtcaacctttccatgggactgacgctgcaatacccagttttcctgcc
gccgaaacatttccaggctctgtagctcagcaggcagctcctgatgtgtaa
DBGET
integrated database retrieval system
