Setaria viridis (green foxtail): 117834620
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Entry
117834620 CDS
T07951
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117834620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117834620
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117834620
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117834620
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
117834620
NCBI-ProteinID:
XP_034570048
LinkDB
All DBs
Position
8:complement(37213930..37214847)
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AA seq
305 aa
AA seq
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MFLPNWYYGGFVADVHAMAAAPAAPGLAVTSVTAENFEAELDAIAALLQRYPIVVIDTEY
PGTVHRPTAGRRECDVTPGERYALVKANVDELPAVQLGITLCDADGNVPVVAAGADGRAC
QRAWEFTFSDFDPVRGRHAPESVAFLTSQGVDFPAARLRGVSSSAFAARLAAVLAPARLR
GGLTWAAFGGAYDFAYMIKMLSGGQPLPGTWQEFMARARDLLGGGMFDAKYMAEHSGRAD
LIGGGLRRVAVRLGAPLLFPEPPCLAGPKSHTACHVYTAMRRHFRDLYRGHDYGAVFDGL
IDGFN
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgttcctcccgaactggtactacggcgggttcgtcgccgacgtccacgccatggcggcg
gcccccgccgcgccgggcctcgcggtcacgtccgtcaccgccgagaacttcgaagcggag
ctcgacgccatcgccgccctgctgcagaggtaccccatcgtcgtcatcgacaccgagtac
ccgggcacggtgcatcgccccaccgccgggcggcgcgagtgcgacgtcaccccgggcgag
cgctacgccctcgtcaaggccaacgtcgacgagctccccgccgtgcagctcgggatcacg
ctttgcgacgcggacgggaacgtccccgtcgtcgcagccggcgccgacggccgcgcctgc
cagcgcgcctgggagttcaccttctccgacttcgaccccgtccgcggccgccatgccccg
gagtccgtggcgttcctgacgtcccagggtgtcgacttcccggcggcgcgcctgcgcggc
gtgagctcctcggcgtttgcggccaggctcgccgccgtcctcgccccggcgcggctccgc
ggcggcctgacgtgggcggcgttcggcggcgcctacgactttgcctacatgatcaagatg
ctctccggcgggcagccgctgccggggacctggcaggagttcatggctcgggcgagggac
ctcctcggcggcgggatgttcgacgccaagtacatggcggagcactccggccgcgccgac
ctgatcggcggcggcctccggcgcgtggcagtccgcctcggcgcgccgctgctcttcccg
gagccaccgtgccttgccggcccgaagagccacaccgcctgccacgtctacacggcgatg
aggaggcacttcagggacctataccgcggccatgactacggcgccgtcttcgacggactc
atcgacggcttcaattga
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