Setaria viridis (green foxtail): 117834730
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Entry
117834730 CDS
T07951
Name
(RefSeq) long chain acyl-CoA synthetase 6, peroxisomal isoform X1
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs00061
Fatty acid biosynthesis
svs00071
Fatty acid degradation
svs01100
Metabolic pathways
svs01212
Fatty acid metabolism
svs04146
Peroxisome
Module
svs_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
117834730
00071 Fatty acid degradation
117834730
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
117834730
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
svs01004
]
117834730
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svs04147
]
117834730
Enzymes [BR:
svs01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
117834730
Lipid biosynthesis proteins [BR:
svs01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
117834730
Exosome [BR:
svs04147
]
Exosomal proteins
Exosomal proteins of breast milk
117834730
Exosomal proteins of breast cancer cells
117834730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
DUF3572
Apo-VLDL-II
Motif
Other DBs
NCBI-GeneID:
117834730
NCBI-ProteinID:
XP_034570145
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Position
8:complement(1777156..1786414)
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AA seq
706 aa
AA seq
DB search
MPREQEQPPMDAAGRRLRAVSAHIRPPAPAAGCGIAANPTAASEYAHVQGYSVVLPEKLQ
TGKWNVYRSARSPLRLINRFPENPDIGTLHDNFVYAVETFRDCRYLGTRIREDGTVGDYK
WMTYGETSTSRTAIGSALIHHGILEGARIGLYFINRPEWIIVDHACAAYSYVSVPLYDTL
GPDAVQFIVNHATVEVIFCVPQTLSALLSFITKMPCVRLIVVVGGEDVKIPPTPANTGVQ
IITYPSLHNQGKMSPQPFRPPKPDNVATICYTSGTTGTPKGAVLSHENLIANVAGSSLGV
KFYPSDVYISYLPLAHIYERANQVALLHYGVAIGFYQGDNLKLMDDLAALRPTVFASVPR
LYNRIYAAITNAVKESGGLKERLFHTAYNAKRQAVLNGKNGRNPSPMWDKLVFNKIKARL
GGRVRLMTSGASPLSSDVMEFLRICFGGEVLEGYGMTETSCVISTMDIGDKLIGHVGSPN
PSCEVKLVDVPEMNYTSEDQPYPRGEICARGPTIFRGYYNDEVQTREVIDEDGWLHTGDI
GLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFIAQCFVYGDSFNSSLVAIV
AVEPEVLKAWAASEGIQYEDLRQLCADPRARAAVLADMDSIGKEAQLRGFEFAKSVTLVA
EPFTLENGLLTPTFKVKRPQAKAYFAKEISDMYAQLQEAESARSKL
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgggagcaggagcaacccccaatggacgccgccgggcgccggctccgcgcggtc
tccgcccacatccggccgccggcgcccgccgcgggctgcggcatcgccgccaaccccacc
gccgccagcgagtacgcccatgtgcagggttacagtgttgttctccctgagaagttgcaa
actggaaagtggaatgtgtacagatctgcacggtcacctctaaggttgatcaacagattt
cctgaaaatccagatatcggaacgctgcatgataattttgtgtatgcagtcgagacgttt
agggattgtcgatacctgggaacaagaatccgtgaagatggaacagttggagattacaaa
tggatgacgtatggggaaactagtacaagcaggactgcaataggttctgctctcattcac
catggaatacttgaaggtgcacgcattggtctgtattttataaacagacctgaatggata
atagttgaccatgcttgtgctgcatactcatatgtatctgtgccactttatgacactctt
ggtccagatgcagttcaattcattgtgaaccatgcaacagtagaagttatattctgtgtg
cctcaaacactaagcgctctgttaagctttataactaagatgccatgtgttcgtcttata
gtggtggtgggcggagaagatgttaagattccacccacacccgcaaatactggagttcaa
attataacttaccccagtctacacaatcagggaaagatgagtcctcaacctttccgacct
ccaaaacctgataatgttgctactatttgttacacgagtggcaccactggtactccaaag
ggagctgttctttctcatgagaacttaatcgcaaatgtagcagggtcaagcctgggagtt
aaattttacccctctgatgtgtatatttcttatttacccctggctcacatctacgagaga
gctaaccaggttgcattgcttcactatggtgttgccattggattctaccaaggggataat
ttgaagctgatggatgatctggctgctttgagaccaacagtattcgcaagtgttcctcgg
ttatataaccgaatttatgcagcaattacaaatgctgtgaaggagtctggtgggctgaaa
gaaagactgttccataccgcatacaatgccaagaggcaagcagttctcaatggtaagaac
ggacgaaatccatccccaatgtgggacaaattggtatttaacaaaataaaagctaggctt
ggtgggcgagtgagactcatgacttcaggtgcttctccattgtcatcagatgtcatggaa
ttcttaaggatatgctttggcggtgaagttcttgaaggctatggaatgacagagacatct
tgtgtcatctctacaatggatattggtgataagttgattggtcatgttggatccccaaac
ccttcttgcgaggttaaacttgtggatgttccagaaatgaattatacttctgaggatcaa
ccatatcctcgtggagaaatctgtgctaggggacctacaatctttcgtggctattataac
gatgaagttcaaacaagagaggtcattgatgaagatggttggttgcacactggagacata
ggtttgtggctgcctggagggcgtttaaaaattatagataggaaaaagaacattttcaag
ttagctcaaggagaatacatagctccagagaagattgagaatgtctatgctaaatgcaag
ttcattgcccaatgctttgtatacggtgatagtttcaactcgtccctagtggccattgta
gcagttgaacctgaggtgttgaaggcttgggctgcatcagaaggaattcagtacgaggac
ttaagacagctctgtgctgatcctagagcaagagccgctgtcctggctgacatggattcc
attggaaaggaagcgcagctaagaggttttgaatttgctaaatctgttacccttgttgcc
gaaccattcacattggaaaatggtctcctcaccccaacgttcaaggtcaaaagaccgcaa
gctaaggcatactttgcaaaagaaatctcagatatgtatgcacaactgcaagaggcagag
tcagctaggtcgaagctataa
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