Setaria viridis (green foxtail): 117835014
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Entry
117835014 CDS
T07951
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117835014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117835014
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117835014
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MamY_C
Motif
Other DBs
NCBI-GeneID:
117835014
NCBI-ProteinID:
XP_034570254
LinkDB
All DBs
Position
9:30630185..30656008
Genome browser
AA seq
1959 aa
AA seq
DB search
MASGGAATSTPPAATGGTSKTVSASLWWDSFVVLSDDLDRAAAGPSVPDALAKRIKSHHA
WLLRSVSMFGKPNEASRSALDASEVAVGEHRLAVKPELMEAALRVSKCLNLDEVQSYILV
KRSSEISPTVHDADADEFLHLVSVQYYLERQCLLKCIRRIFVHATHTGDGSDSTDAIQDE
ASLLISEEVERKLISVIEDSFSAASSVRAEAEFTVSSLEETLIEVNLILDILFLAFYDNF
SRCNGGLWISLCSLFKDILCGSYDVGKFAVSVEAKNSFHYAKAQLLLILIETLDFENLLR
MIRDEVPLSVGCSTFSVGDILEMDVEISKIPEFSMVESGPLVLAWAVFLCLVLSLPESNA
NLEIDHTLYARRAFEFAPFNYLLGVLCSSIFRESDGPVSGYRGILRTFISAFIASYEISQ
AEDSSLDMISSILYEVYDGEESLCMQFWDKNSFVDGPIRSVLHMVEKEYPFQISELVRFL
SAVCHGTWPAQCVYNYLERMNGVTTIYAIPGHVAENVNYGHQIESHHPVSIPGIEGIKVP
CGTNGYILKVLQGDAVLVRWEFPHSGVFLLLVTLAQELHSCNYKEASDIMDLLYRMVSSN
KDLCFALLHVDKSPAVQKSKNLGQLENHVRIDIAKIFCNSIFKYVQDVNNADILSKTLGL
LAEMIKCAPYHVFDAAFECNIFTSQLNGPSSDWLLSGALARMLFAASEGNGDCSLLTTSV
LDFATQVLRKGAAADDIISPLIVFSIQYIMVNHMNWKYKKYSRWKTTLRVFELVKTCIHV
KPFSSKLGGIIWEILLYDSSVHSVLWSILSLATQLLEHSYRRNYHGLKDIEDIELVLCNG
LDIIYYILSKLPEDLLPYPPFVTMVLSSSLKPFTLITALTSLLSFRNSDIQVAAARALSV
LCLIAYKAQPQLMENVSFTGDVSEIQRLQATISSILDEEEKTNDCLVVAVFNLLTSAARY
QPAFLNSLMEQSMKSTDHNSSTNNQNDGSSVLTSKSNAGLVDQILDYIVRSIELMNRSPS
VLLSILDLLKALWESGIQFLFVLEKLRSSITFWDNLSRCIRATLDICPVDCIAAVDENFS
LRYHCQGKIFEIMSHELFLQGKLLAETSNPAPNGSKGQKEHSAPCRSSVVLKWFDTAILD
DLISHLSSNAYNKKLLHRAKVAACLCTIHLITKLSTGDTGSLSFSVVKKIQIISTKLSQH
HSFSALQSQYCQHGYSGEQELNNLIINDLYHHIRGELEGRKISSGPFQELLSFLLEFKLF
EHDPLEQLQNTCPVANANFLFNVEHIHDELGVDLWISSDRKSSKEVAEEMLDIMHKSNLM
KCYADAKLSTLKSFLTFLSVYTGASSNKNLDLPDGGISTATTQSAVKCACKSFQSTVDSL
LPQVDTNEVLFPLLSGQVELLLTLARILFDQAKQNKKSSHLYPDIVLLMKTSVASTSFLV
DLLSSTHALKQPVKALLVLLLSSYEFMYSKVDIKDLPDNVNIFGELAVLSVSLLPVLCKL
AENREFSDLAVASMDLILKGFVPSEVCVPILQKHFHLQAILHRCQHGGLLSTQVILNFLL
TLGRTKDGATVLQSANIFAFLKVLLSQLSLDDSCLRNSLSAQVKDVNQWGLGLAIVASLN
HCLDDDISRNNVANSTISFLSGQVPLMSSYLSAQSVTAHQNKKRALSQKSQTSLSTLSLT
ENILILLCILAKYHFPRDTGKKEVDSELREIIIHLLAFVSKGSVKASSSSNWNSSFFCPA
VVKEELALNEKPPHIRSKHGWFKFAASCTLSTSGASVSASTALPLVIRDKSSGDSDSIRQ
TRFTEMLAVQIYRIAFLIMKFLCSQAKEAVKRAEELEFLDLAHFPELPMPDILHGLQDQV
VSIVTEVFEANGSSTLNPETERVCHLLLVTLEMSLYMELCVSQSCGIRPVLGRFEDFCKG
IKAMLQAIEKHSSFKALARSLTQITTLLYPGLVQTNLFM
NT seq
5880 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcggcggggcggccacctccaccccccccgccgccaccggaggcaccagcaag
accgtctctgcgtcgctttggtgggactccttcgtcgtcctttccgacgacctggaccgc
gccgccgccggtccctccgtcccggacgctctcgcgaagcggatcaagagccaccacgca
tggctccttcggtcggtctccatgttcgggaagccgaacgaggcgtcgaggagcgcgctg
gatgccagcgaggtcgccgtgggggagcaccgcctggctgtcaagcccgagctcatggag
gctgcgcttcgtgtgagcaagtgcctgaacttggatgaggtgcagtcatacattctagtc
aagcgatcctcagaaatctctccaacagttcatgatgctgatgctgacgagtttcttcat
ctggtatctgtacaatactaccttgagcgtcaatgcttactgaagtgcatcagaagaatc
tttgttcatgcaacccacacaggtgatgggtctgattcaactgatgccattcaggacgag
gcttcactattgatcagtgaagaggtagaaaggaaattgatatccgtcattgaagattcc
ttctctgctgcatcttctgtaagagcggaagcagaatttacagtttctagtctggaagaa
actttgattgaagttaacttgatccttgacatattgtttcttgctttctatgataacttc
tcaagatgtaatggtggattgtggataagtttgtgttcccttttcaaggacattctctgt
ggttcttatgatgttgggaaatttgctgtatctgttgaggcaaagaattcgtttcattat
gctaaagctcagctacttctcattcttattgaaactttggactttgaaaatcttctcaga
atgattcgggatgaagttcctctcagtgtggggtgttctacattttctgttggtgatatt
cttgagatggatgttgaaatatcaaaaattcctgaattttcaatggtagaatcaggacca
cttgtactcgcttgggcagtttttctgtgcctagttctgtctcttccagaaagtaatgcc
aacttggaaattgatcatacactgtatgcccgacgggcttttgagtttgcaccattcaat
tatttactaggagttctttgctcaagcatcttccgggagtcagatggtcctgtttctggt
tatcgaggtatattgcgaacatttatttcagcattcattgcttcatatgagatatctcag
gcagaagacagttctcttgacatgatttcaagtattttatatgaagtttatgatggagag
gaatctctctgcatgcagttttgggataaaaatagttttgttgatggtccaattaggtct
gttcttcatatggtggaaaaggagtatccttttcaaatatcagagctggtccgcttctta
tcagctgtttgccatgggacctggcctgctcaatgtgtatacaactatcttgagagaatg
aatggagttacaacaatctatgccatccctggtcatgtcgcagaaaatgtgaattacggc
catcaaattgaaagtcatcatccagttagcattcctggtattgaaggcattaaggttcca
tgtggaaccaatggttacattttgaaagttcttcaaggggatgctgtattagttcgctgg
gagttcccgcattctggggtattccttttgctcgtaactttggcccaagagcttcactca
tgcaattacaaggaggcatctgacatcatggacctactttatcgtatggtatcatcaaat
aaggacttgtgcttcgctttgttgcatgttgacaagtcaccggctgtacaaaaatcaaag
aacttggggcaacttgaaaatcatgtcaggattgatattgctaagatattttgcaattcc
attttcaaatatgtgcaagatgttaataatgctgacatattgtccaaaaccctaggtctg
ctagcagaaatgatcaaatgtgctccatatcacgtgtttgatgcggcgtttgagtgcaac
atcttcacttcacaattaaatggtccatcaagtgattggttactttccggagccctagct
agaatgctttttgctgcctcggagggaaatggagattgttctttacttacaacttcagtg
cttgattttgccactcaggttcttcggaaaggagctgctgctgatgatataatatcacct
ttaattgttttctcaattcagtacatcatggttaatcatatgaactggaaatacaagaaa
tatagtcgttggaagacaacccttcgggtgtttgaattggtgaaaacctgtattcatgtg
aaaccattctcatcaaagcttggtggcatcatttgggaaattctgttatatgattcttct
gtccacagtgtactttggagcatattatctttggcaacacaactactggaacattcatat
agacgcaattatcatggccttaaggatattgaagatattgagcttgtcctttgcaatgga
cttgatattatatattacatcctgtccaaattaccagaggatttactgccttatccacca
tttgttaccatggttttgtcatcatcgttgaagccatttactttgataacagctctaaca
tcattattgtcctttcgtaattctgatatacaagtagctgccgctagagcattatcagta
ttgtgtctcattgcgtataaagcgcagcctcaattgatggagaatgtcagctttactggt
gatgtttctgagattcagagattgcaagcaactatatcttccattcttgatgaggaagag
aaaactaatgattgtttggttgtggctgtattcaaccttttgacgtctgctgctcgttat
cagcctgcttttcttaattccttgatggagcagagtatgaagtcaactgatcataattct
tccaccaataatcagaacgatggatcttcagttcttacttcaaaaagtaatgctggactt
gttgatcaaatcttggactatattgtgaggtccattgagctcatgaatagatctccttcc
gtgttacttagtattcttgacttactcaaggccttatgggaaagtggtattcaattttta
tttgtattggagaagctgagaagctcgataacattctgggataatttatcaaggtgtatt
cgtgctacacttgatatctgcccagttgactgtattgctgctgttgatgagaacttttca
ttgaggtaccactgtcaaggtaaaattttcgaaattatgtcacatgagttgttcttgcaa
ggaaaattgcttgcagagacttctaatcctgccccaaatggttcgaaggggcaaaaagag
cacagtgcaccttgtcgaagcagtgtagtcttgaaatggtttgatactgctattttggat
gatctgatcagtcatttgtcaagtaatgcatacaataagaaacttcttcatcgtgctaag
gtggctgcctgcctttgtaccatccatctaataacaaagttgtcaactggtgatactgga
agcttgtctttctcagtggttaagaagattcagatcatatcaacaaaattgtcacagcac
cattcattctcagctctccagtcgcaatattgtcagcatggatacagcggtgaacaagaa
cttaataatttgattatcaatgatctttaccatcacattcgtggagaacttgaaggtcgt
aagattagctctggtccttttcaggagctgcttagtttccttcttgagtttaaacttttt
gaacacgatcccttggagcaactacagaacacttgcccagtggcaaatgccaactttttg
ttcaacgttgaacacatacatgacgagcttggggttgatctttggattagttcggaccgt
aagagctctaaagaagtagctgaagaaatgctggatattatgcataaatcaaatctgatg
aaatgttatgctgatgcaaagctttctacattgaaatccttcttgacatttttatctgtc
tacacaggagcgagctccaacaaaaacttggacttgcctgatggagggatttcaacagca
accacacaatcggcagttaagtgtgcatgcaaatcattccagtcaaccgtagattcacta
cttcctcaagttgatacaaatgaggttttgtttcccctcttatctgggcaagtggaattg
ttgcttactcttgcccggatattatttgatcaagcaaagcaaaataagaaatcaagccat
ctctatccagatattgtacttctaatgaaaacttcagttgcgagcacttcttttttggtt
gatctcttgtcatccactcatgctcttaagcaaccagtgaaggccctccttgttctgctt
ttgtcttcatatgagttcatgtacagcaaggttgacataaaagacctaccagacaatgtt
aacatctttggtgaattagctgttttaagtgtgagtttgcttcctgtgctgtgcaaattg
gcagagaatagggaattctctgatctggctgttgcatcgatggacttaatattgaagggg
tttgtaccttctgaagtatgtgtgcctattctacaaaagcattttcatctccaggctata
ctgcatagatgccaacatggtggtttattgtctactcaagttatactgaattttcttttg
accttggggcgaacaaaggatggtgctacagttcttcagtctgccaatatttttgccttc
ttaaaagtacttttaagtcagttgtctctggatgactcctgtttgagaaattccttgagc
gcccaagtgaaggatgtgaatcaatggggtttgggtcttgctattgttgcgtcactgaac
cattgtttggatgatgatatttctcgtaacaatgttgcgaacagtactatcagcttcctt
tcaggacaggtgcctttgatgtcatcatatctatccgcacagagtgttactgctcatcag
aacaagaaacgggcattgtcgcagaagtcacagacgtcactttcaaccctcagtcttact
gagaatattctcatacttctctgtattttggcaaaatatcattttccacgggacactgga
aaaaaggaagtagattcagaactaagagagattattatccacctgctagcatttgtaagc
aaaggaagtgtaaaggctagcagttcctctaattggaactcgtcttttttctgccctgct
gttgtcaaagaggaactagcacttaatgagaaaccaccacatattcgtagcaagcatgga
tggttcaaatttgctgcaagttgtactttgtcaacttcaggtgcttcagtttctgccagt
acagcattacctctagtgatcagagacaagagttcaggagattctgattctataaggcaa
actcgctttactgagatgttagctgttcagatttacagaatagcttttcttattatgaag
ttcctctgtagtcaagcaaaagaagcagtaaaaagggcagaagaactggagtttcttgac
cttgctcattttcctgagcttcccatgccagatattcttcacggactacaggatcaagtg
gtttctatagtcactgaagtgtttgaggcaaatgggtcaagcactctaaatcctgagaca
gagagggtatgccaccttctcttggtgacacttgaaatgtcactttacatggaactatgt
gtatcccaatcttgtggcatcaggccagtgcttggtcggtttgaagatttctgcaaggga
attaaggctatgcttcaagctatagagaagcactccagttttaaagcactggccaggtcg
ctgactcaaattactactcttttgtatcccgggctcgtgcaaactaaccttttcatgtaa
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integrated database retrieval system
