Setaria viridis (green foxtail): 117835137
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Entry
117835137 CDS
T07951
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03030
DNA replication
svs03420
Nucleotide excision repair
svs03430
Mismatch repair
svs03440
Homologous recombination
svs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117835137
03420 Nucleotide excision repair
117835137
03430 Mismatch repair
117835137
03440 Homologous recombination
117835137
03460 Fanconi anemia pathway
117835137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
svs03000
]
117835137
03032 DNA replication proteins [BR:
svs03032
]
117835137
03400 DNA repair and recombination proteins [BR:
svs03400
]
117835137
Transcription factors [BR:
svs03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117835137
DNA replication proteins [BR:
svs03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117835137
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117835137
MMR (mismatch excision repair)
117835137
DSBR (double strand breaks repair)
HR (homologous recombination)
117835137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RMI1_C
BRCA-2_OB3
Motif
Other DBs
NCBI-GeneID:
117835137
NCBI-ProteinID:
XP_034570400
LinkDB
All DBs
Position
9:complement(50602988..50606418)
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AA seq
623 aa
AA seq
DB search
MDAAKSVTPGAVSHILEKPSPADAATVPELVVQVVDLKAIGNRFGFMASDGKDKIKAMLP
TQFAAEVRSGNLQNLGLIRILDYTCNAVGGNNDNKALIITKCEVVSQVLDAEIKSEAKKE
EEPAIVIKPKDEEMVLSKPVNAPPVVLKPKLEVKSASQIVNEQRGNAAPAARLSMTRRVH
PLISLNPYQGNWVIKVRVTSKGNLRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAAKK
FYPMFELGKVYYVSKGSLRIANKQFKTVQNDYEMTLNESAVVEEAEGETFIPPVQYNFVK
IDQLGSYVNGRELVDIVGVVQSVSPTMSIRRKLDNETIPKRDIVVADDSGKTVSISLWND
LATTTGQELLDMVDSSPIIAIRSLRVSDFQGVSLSTVGKSTLMVNPDLPEVHNLKSWYDN
EGKGTSMAPIGADMGAARAGGLRSMYSDRVFLSHITSDPNMGHEKPVFFSLNAIISHIKP
DQNMWYRACKTCNKKVTEAVGGGYWCEGCNKNDAECSLRYIMVIKVSDPTGEAWVSVFNE
HAERIIGCSADELDRIRKEEGDDSYIQKLKEATWVPHLFRVSVAQHEYMNERRQRITVRT
EAPVDYAAESKYLLEEIAKLTAC
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgccaagtccgtgacgccgggcgccgtgtcccacatcctggagaagccgtcg
ccggccgacgccgccacggtcccggagctcgtcgtccaggtcgtcgacctcaaggccatc
ggcaaccgttttggtttcatggcgagcgacggcaaggacaagatcaaggcgatgctcccc
acccaattcgcggcggaggttcgctccggcaacctgcagaacctcggcctcatccgcatc
ctcgattacacctgcaacgccgtcggcggcaacaacgacaacaaggccttgattatcacc
aaatgcgaggttgtgtctcaagtgctcgacgccgagatcaagagcgaggccaagaaagaa
gaggagcctgcgattgtcatcaagcccaaggacgaagaaatggttttgtccaagcccgta
aatgctcccccggtcgtgctgaagccgaagctggaggtgaaatccgcgtcccagatcgtg
aacgagcagcgtggaaatgctgctccagcggcgcgcctgtccatgacaaggagggtccat
cctttgatctctctcaacccctaccagggtaactgggtcatcaaggtgcgggttacgagc
aaaggcaacctgagaacctacaagaatgcccgtggagaaggctgtgtcttcaatgtagag
ctcactgatgaggatggcacccagatccaggccaccatgttcaatgaggctgcaaagaag
ttctacccaatgtttgagctggggaaggtctactatgtctccaagggatcacttaggatt
gccaacaagcagttcaagactgtccagaatgattatgagatgacgctgaatgagagtgct
gttgttgaagaagcagagggggaaactttcattccaccggtgcaatacaattttgtcaag
attgatcaactaggatcatatgtcaatggcagggagcttgtagatattgttggtgttgtt
cagagcgtatcacccacaatgagtattaggagaaagcttgacaatgagacaatcccaaag
cgtgacattgttgttgcagatgactcgggcaaaactgttagtatttcactttggaatgat
cttgctactaccactggccaagaactcttggacatggttgacagttcgcccatcattgcg
ataaggagcttaagagtgtctgacttccaaggtgtgtccctttcaactgtaggcaaaagt
actcttatggttaatccagaccttcctgaagtgcacaatcttaaatcatggtatgacaat
gaaggcaagggtacttcaatggcaccgattggcgcagacatgggtgcagcacgggctggt
ggcttgagatccatgtattctgatagagtttttctgtctcacatcaccagtgatcccaac
atgggtcacgaaaagcctgttttcttcagtttgaatgctatcataagccacatcaagcct
gatcagaacatgtggtaccgtgcttgcaagacctgcaacaagaaggtgactgaagctgtt
ggaggtggatactggtgtgaaggatgcaataagaatgatgctgagtgctcactgagatac
atcatggtcatcaaggtttctgatcccactggtgaggcatgggtttctgtcttcaacgag
catgcagagaggatcattggctgcagcgctgatgagcttgatcggatcaggaaagaggag
ggcgacgacagctacattcagaagctcaaggaagccacatgggttccccatctgttccgc
gtcagcgtggcgcagcatgagtacatgaacgagaggaggcagaggatcaccgtgaggaca
gaggcgccggttgactacgcagctgaatctaagtacctgctcgaggagatcgcgaagctt
actgcttgctag
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