Setaria viridis (green foxtail): 117835588
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Entry
117835588 CDS
T07951
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs00040
Pentose and glucuronate interconversions
svs01100
Metabolic pathways
Module
svs_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117835588
Enzymes [BR:
svs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
117835588
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
117835588
NCBI-ProteinID:
XP_034570837
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Position
9:complement(50463445..50466355)
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AA seq
429 aa
AA seq
DB search
MGLERLLLAFVVAMWIFPSMLLTPANSEDVFPEADGPTAESSDELRLRSGPPPRVVDVDD
YGAGSNGGCDDTEAFLAAWREACNSTDYRSMFLVPEGKTYLLMPVTFRGPCRAISITAMI
KGTLEAPSNRSVWLDRNLQEWITFEGIDRLHVLGGGTLNGNGQQWWINSCKLNKPMRCIK
GPTALYFRRCTHLVVEDLQVRDSMQMHVAISYSWNVLVSKLFITAPGWSPNTDGIHVSNS
KEVSISDCTISTGDDCVSIVSGSMFVRVTGIFCGPGHGISIGSLGASNSWAHVSDVLVEK
ATLQGTTNGVRIKTWQGGHGFAERITFQDVSMHNVTNPVIIDQNYCDPRKPCHEQGSGVA
VRNIHYRNISGTSASKVAISFICSEAVHCDGIVMQDINLVGEGRHTACSYRNATVAQLGY
IFPFCSVEM
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgggtctagagaggcttcttctagccttcgtcgttgccatgtggatctttccttccatg
ctgctgacacctgccaactcggaggacgtctttccagaagctgacggcccgacggcagaa
agttcagacgagctgcggctcaggtccgggccgccgccgagggtcgtcgacgtcgacgac
tacggagcgggatccaacggcggctgtgacgacaccgaggcgtttcttgcggcatggagg
gaggcctgcaactccaccgattaccggtccatgttcctcgtgcccgaggggaagacctac
ctcctgatgcccgtgaccttccgtggcccctgcagagctatctcgatcactgcaatgata
aagggaacgctcgaggctccgtccaaccgatcggtctggctggatcgcaacctgcaggag
tggatcacgttcgagggcatcgatcgcctccatgtactcggtggcgggacgctcaatggg
aacggacagcagtggtggatcaactcgtgcaagctcaacaaaccaatgcgatgcatcaag
ggcccgacggcgctgtacttccgaagatgcacgcacctggtcgtggaggatctgcaggtg
agggacagcatgcagatgcacgtcgcgatctcctactcgtggaacgtgctcgtgtcgaag
ctgttcatcaccgcgccgggatggagccccaacactgacggcatccatgtatccaacagc
aaggaagtctccataagcgactgcaccatcagcacaggtgacgactgtgtatccattgtg
tctggatcaatgtttgtacgggtgaccggcatattttgcggaccaggccatggaataagc
attggtagccttggagcaagcaactcgtgggcccatgtctctgacgtgcttgtggagaag
gccacactgcagggcacaaccaacggtgtgcggatcaaaacttggcagggagggcatggt
tttgctgaaagaataacctttcaagatgtatcaatgcataatgttactaacccggtaatt
atcgatcaaaattattgcgaccccaggaaaccctgtcatgaacagggatcaggtgttgct
gtacgtaatatacattacagaaacatatctggaaccagtgcttcaaaagttgccatcagt
ttcatttgcagtgaagctgtccattgtgatggaatagtgatgcaagatataaacttggtt
ggagaaggaagacacactgcatgctcttacaggaacgccacagtagcacaattagggtat
atcttccccttttgcagtgtggaaatgtag
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