Setaria viridis (green foxtail): 117835593
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Entry
117835593 CDS
T07951
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117835593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117835593
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117835593
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117835593
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
117835593
NCBI-ProteinID:
XP_034570840
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Position
9:35633868..35636078
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AA seq
406 aa
AA seq
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MNLLGRVGFLSVVLIDFELPDARTMTSCPPSLQDVVFVSPTRSWIPSSKRIQNRPRIKQC
LTPTICMCTKWAGGFVVYDHVSRQLQQTLSRRSAMIPAGAFYHPQGQPPFAIAMTAPAAS
YSAAVPMQALPTAWYHATVPIMQGPPPPFGVTVRSVWADNLGAVRLDMGYFAAHARCVAV
KVHYPGVVVHGAGGQQDPGAEKRYAVVKANVDALKPLQVGLAVCTDDGRVAAWEFNLSDF
DPAADPHAAQSLLHLQSRGLNCLEHRLRGIPMEELAMLLRFSGLLGNRPGVSWVTHTGAY
HLAYLMKVINGGKPLAGDMDGFLGSVRRSLGEDVYDVATMAADCPDMPVGLEHIAGKLRL
PPPLSTNPLAGAGSVLALEAFLKLKPQRFRDDVTRYRGVLQGLHTI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaacttgctgggccgcgtgggctttctttcggttgtcttgatcgattttgaacttccc
gacgcacgcacgatgacgtcctgtcctccctccttgcaggatgttgtgttcgtttctccg
actcgtagttggatcccgagttcgaaacggattcagaaccgacctcgcatcaaacaatgt
ctgacgcccacaatatgtatgtgcacgaagtgggcaggaggctttgtggtttacgatcac
gtttcacgacagctgcagcaaacgctaagccggaggagcgccatgatccccgccggagcg
ttctaccacccgcaggggcagccgcctttcgccatcgccatgactgcgccggcagcttcg
tactccgccgccgtccctatgcaggcgctgccgacagcttggtaccacgccaccgtcccc
atcatgcaggggccgccgccgccgttcggcgtcaccgtccgctcggtgtgggccgacaac
ctcggcgccgtgcggcttgacatgggctacttcgcggcgcacgcgcgctgcgtcgccgtg
aaggtccactaccccggcgtcgtcgtccacggcgccggcggccagcaggaccccggcgcg
gagaagcggtacgccgtcgtgaaggcgaacgtggacgcgctcaagccgctccaggtcggg
ctcgccgtctgcaccgacgacgggcgggtcgccgcctgggagttcaacctgtccgacttc
gacccggccgccgacccccacgcggcccagtccctcctgcacctccagagccgcggcctc
aactgcctcgagcaccgcctccgtggcatccccatggaggagctcgccatgctgctccgc
ttcagcgggttgctgggcaaccggccgggggtgtcgtgggtcacgcacaccggagcttac
cacctcgcgtacctgatgaaggtaatcaatggtggtaaaccacttgccggcgacatggac
gggttcctgggttcggtgcggaggtctcttggcgaggacgtctacgatgtggcgacgatg
gccgctgactgcccagacatgccggtggggctggaacacatcgcgggcaagctcaggttg
ccgccgccgctgtccacgaacccgctcgcgggcgccggcagcgtgctcgctctagaagcg
ttcttgaagctcaaacctcagaggttccgagatgacgtgaccagatacagaggcgtcctg
caaggactgcacactatctga
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