Setaria viridis (green foxtail): 117835756
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Entry
117835756 CDS
T07951
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C
KO
K07466
replication factor A1
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03030
DNA replication
svs03420
Nucleotide excision repair
svs03430
Mismatch repair
svs03440
Homologous recombination
svs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117835756
03420 Nucleotide excision repair
117835756
03430 Mismatch repair
117835756
03440 Homologous recombination
117835756
03460 Fanconi anemia pathway
117835756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
svs03000
]
117835756
03032 DNA replication proteins [BR:
svs03032
]
117835756
03400 DNA repair and recombination proteins [BR:
svs03400
]
117835756
Transcription factors [BR:
svs03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117835756
DNA replication proteins [BR:
svs03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117835756
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117835756
MMR (mismatch excision repair)
117835756
DSBR (double strand breaks repair)
HR (homologous recombination)
117835756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
zf-CCHC_2
zf-CCHC_3
DUF223
BRCA-2_OB1
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
117835756
NCBI-ProteinID:
XP_034571323
LinkDB
All DBs
Position
1:complement(23689065..23693361)
Genome browser
AA seq
957 aa
AA seq
DB search
MHRTHISPSQTASRSAEPPPASSTSPTLVRGSVTIPNGTENLAQFRNPSCGGSFWKVRLG
GGSSGSMEAAAQLTPGGVRAIVDGALPAQIQPVLQVLQVRQVTNPNPNPNPNTSERYRMT
LSDGVHSHQAILATAFNPFVWDGTLRVGTIVHLNEFICNTIHDKRIIIVLKLEILQTECA
IIGSPQNYLAQSLEKVLDPSLSAIAAQKNIGTDFGGPGMLGSSIAPRAEQASNNLPYGVP
YSGAQGIVSSSIGQTLEPDHNNGRAVVPDHNNMFTGGSYGTVSAQNTVNASMVEPRSQQP
SLRSHHNQRFTVSGTREALTPPSNTYEHPEKPSYQQLPPGYINRTPVARNVSTSRVVPIS
ALHPYDTRWTIKARVTAKTAVKHWNNARGTGRLFSFDLLDGEGGEIRAVCFKEAVDQFYD
LIEVDKVYLISRGSVRPAQKQFNALNNDNEITLEALTSSVEICSSDDYNIPRAQYNFRQI
SEIENIDSQTVIDLLGVVTSVGPSVLITRKNGIETQKRTLQLRDMSGWSVEVTFWGNFCD
VEGQQLQLQCDSGLNPILALVGARISDFNGRSVSTISSTRLKINPDFSDADRLRQWYIAE
GENTACVSLSREQFNSVQAVRKTIAQIGDGNLGRDKANWITVKAAISHVHTDSFCYPACP
LIFNEKPCNKKVVDCGDGTWLCERCDKSFGNCEYRYAVRFQIQDHTGTIYVTAFQEAGEH
IFGCTAQELHTVRNIDRDDARFTEIIEGARWHPNLFKLSIREESFNDEPRVQCKIVNAEK
LDPSKESSILCKDIDSLLQGRSGPSTGDQGNFATNIGFSKSPGGHNVLTSNNAYGMNVCG
VNQFGQKGSVSGGMSTPSTCMDNQQQPGAGGFIGNNYGSAGSNVRLDLCFKCNKPGHYSR
DCPQQATAPQHQAYGNGAASGGFMGGNYGSSAAGNGRPGSCFKCKQPGHWAGECPGR
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgaacccacatctctccctcccaaaccgcctcgagatccgcggaaccgccgccc
gcctcatctacttcacctacactagtccggggttccgtaaccattccgaacggaactgag
aacctcgcccaatttcgaaatcctagttgcggcggaagcttctggaaggttcgcctcggc
ggcgggtcctccggttcgatggaggccgcggcgcagctgacgccgggcggggtgcgggcg
atcgtggacggggcgctgccggcgcagatccagccggtgctccaggtgctgcaggtgcgc
caggtaaccaaccccaaccccaaccccaaccccaacacctcggagcgttaccgcatgacg
ctctccgacggcgtccactcgcatcaggccatactcgccaccgccttcaacccattcgtc
tgggacggcaccctccgcgtgggcaccattgtccacctcaacgagttcatctgcaacacc
atccatgataaaaggatcatcattgtgttgaaacttgaaattctgcaaactgaatgtgcc
ataatcgggagcccccaaaactacttggcacaaagtctagagaaggtactagatcccagc
ttatcggcaattgctgctcaaaaaaacattggaaccgatttcggtggcccaggcatgctg
gggtcttctattgctccgagggcagagcaggcttccaacaatctaccatatggtgtaccc
tatagtggtgctcaaggcatagtgagttcttccattggccagacattagaacctgatcat
aacaatggccgggcagtagtacctgatcataacaatatgttcactggaggctcttatggt
acagtatcagcacaaaacactgtaaatgcaagtatggtggaaccaagatctcagcagcct
tctctgagatctcatcataaccaacggtttactgttagtggcacacgtgaggccttgacc
cctcctagcaatacttatgagcacccagaaaagccttcataccaacagctgcctccaggg
tatatcaatagaacccctgttgctaggaatgtatcaacatcccgtgttgtcccaataagt
gcattgcatccgtatgatactaggtggacaatcaaggctagggtgactgctaagactgct
gtcaagcattggaacaatgccagaggtacaggaagacttttctcatttgatctccttgat
ggagaaggtggggaaattcgtgcagtatgcttcaaagaagcggttgatcagttttatgac
ctaattgaagttgataaggtgtacttgatatcaagaggatctgtgaggcctgcacagaag
cagtttaatgctttgaataatgataatgaaataactctggaggctttaacctcatctgta
gagatttgttctagtgatgattataacattcctagggcgcagtacaatttccggcagatc
agtgaaatagagaacattgatagtcaaactgtgatagatttacttggtgttgttacatca
gttggtccttctgttttgataacgaggaagaatggcatcgaaacccagaaaagaaccctt
caactgagggacatgtctggttggagtgtggaagtgaccttttggggcaacttctgtgat
gttgaaggtcagcagctgcagctgcagtgtgattctggtttgaatcctatacttgcttta
gtaggtgcccgcatcagtgattttaatggcagatcggtgagtacaatcagttcaacccgg
ttaaaaataaacccagacttttctgatgctgataggctgaggcagtggtacatagctgaa
ggagagaacactgcttgtgtttctctatcccgggaacaatttaattcagtccaggctgtc
cgcaaaacaattgcgcaaattggggatggaaacttgggacgcgataaggcaaactggatc
actgttaaggctgcaatctcacacgtacatactgacagtttttgttatccagcatgccct
ttgatttttaatgagaagccatgcaacaaaaaggtcgtagattgtggtgatgggacgtgg
ctttgtgaaagatgtgataagagctttggaaactgtgagtacaggtacgcagtaaggttt
caaatccaagatcacactggcactatctatgttactgcattccaggaggctggtgaacat
atttttggctgcacggcacaagaacttcacacagtaagaaatattgaccgggatgatgcc
cgattcactgagatcattgaaggggcccgttggcatccaaatctattcaagttgagcatc
agggaggaaagcttcaatgatgagccacgtgtgcaatgtaaaattgttaatgctgaaaaa
ctggacccatccaaggagagcagcatcctttgtaaagatattgacagccttttgcagggc
agatcaggcccaagcacaggagatcaaggcaactttgctactaacattggtttcagcaag
tctccaggtggtcacaatgtgcttacctccaataatgcctatggcatgaacgtgtgtggc
gtaaatcagtttgggcagaaaggaagcgtaagcggggggatgtctactccatctacatgt
atggataatcaacaacaaccgggagctggaggcttcataggcaacaactatggttctgct
ggtagcaatgttaggttggatctatgcttcaagtgtaataagcctgggcactattctaga
gactgcccacagcaggctactgccccacagcaccaggcatatggcaatggtgctgcatca
ggaggctttatgggcggtaactatggctcttctgcagctggcaatggcaggccgggttct
tgcttcaaatgcaagcagcctggacattgggctggggagtgtcctgggcgctaa
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