Setaria viridis (green foxtail): 117835951
Help
Entry
117835951 CDS
T07951
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117835951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117835951
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
117835951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
DEAD
Motif
Other DBs
NCBI-GeneID:
117835951
NCBI-ProteinID:
XP_034571177
LinkDB
All DBs
Position
9:complement(48312212..48317968)
Genome browser
AA seq
1233 aa
AA seq
DB search
MIKGSTSHRNHPIGSVPFEAFHNGSWHAVNSIRIRNGGLFVKFVHSGSTVEHNIDGDYLR
LHSRKATCLDCSHILRPGADVCVKQASASGERKSCVPLYRDARLIKINKKHHTDQCLCLS
TVSFYKDQCPGSKGKVITGTMSIVTLGDVFILQKLHSGELQDGSMQWRSAEDCLHQNRSK
LLSARFSAEVAHLIVLSRLRGMEFNIKAVEGKIIYQIIKGDQALYSDDSMSIPPGFGKSM
DIISFKTRDEALRPRIRTVPVTQVKKHNLTEDRCTTVMDELDGTQDVEVLYEHVDLRRSK
RMKTQPDRFTSYDAPNFNRTCNKKKEGNTSSTKNKNSQSDFSWDSPVQEESSDEEVLGNP
SVKQTVSGPFMVKEDPRSMEGQRKNPVKRTKCSFPVKEKPTSVEIEKSTAKQRSSDSHIP
HAPAKNKEKYSRPPLSFQLKPFTSSHILRGNSEPAFCQKRGRKRKKHMREREYKEMIDQC
IGNIQCEMERDSDFKLDVHITNCSGHAYQEGDFTWPSSTDSQEEKDEFEELWKQMDYALT
SLALLEQKQMQDSEATHESNTDLGKGGERCHHDCILDEQLGLTCRLCNVVCTEAKDIFPP
MFAGKDHERPGWSEFSQDEHVLDSSFLEICAPEFSKFKGSGNVWASITDVEPKLHAHQRK
AFEFIWKNLAGSLQLEEMDDSTASRGGCVVAHTPGAGKTLLLISFLVSYLKVHPRSRPLV
LTPKAAIHTWRREFETWGISLPLHVLHYSNRRGKAMGTLTSKMHAILKNFHQPSWKMMRM
MDSLDKLRKWHENPSILLMTYPSFLALTKEDTKLQHRAFMAKVLVNNPGLLILDEGHNPR
GNKSKLRKLLMKVKTEFRILLSGTVFQNNFEEYFNTLSLARPRFVSDVMTALVPEAERET
RNRTGKHQEALARRIFVEKVGQKIESSSIHDRVDGISLLNKLTCGFIDSFEGTKENNLPG
IRVYTLFMKPTDIQEEVLTKVTMPVPGTARYPLEVELLITIASIHPCLIKTTKCASTYFT
PEEVARVEKYKQKYAVGCKTKFVIDLLHESSFRGERVLIFCHNVSPINFLVKLIEIVFGW
CLGEEVLVLQGDQELPVRSDVMDKFNGDKKGKRKVLIASTTACAEGISLTGASRLVMLDS
EWNHSKTMQAIARAFRPGQERMVYVYLLVASGTWEEDKYNSNRRKAWIAKMVFFGRYVDE
PLRNHVTEIDDEVLKELADEDETKTFHKIVKQD
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagggatccacaagccaccgtaaccatcccatcggttcagttccattcgaggca
tttcataacggatcatggcatgcagttaattctataaggatacggaatggtggtctcttt
gtgaaatttgtccactctggatccactgtcgagcataatattgatggggactatctgcgc
ttacattccagaaaggcaacttgcttagattgctcacatattctcaggccaggtgctgat
gtctgtgtaaagcaagcaagtgccagtggagaaaggaaatcttgtgtaccattgtatcgt
gatgcaaggctcatcaaaatcaataaaaaacatcacacagaccagtgcctctgcttgtct
actgttagtttctacaaagatcagtgccctggcagtaaaggtaaagtgataactggtaca
atgtccatagtgacactaggtgatgttttcatcttgcaaaagctccattctggggagctg
caggatggcagcatgcaatggcgttcggcagaggattgcctccatcagaatagaagcaag
ttgttaagtgcaagattttctgcagaagttgcacacctgatagttttatctagactaagg
ggaatggaattcaacatcaaggcggtagaaggcaagatcatttatcaaattatcaaagga
gatcaagcgctgtatagtgatgattccatgagcatacctccaggttttggcaagagcatg
gacataatatcattcaaaacacgtgatgaggctttacgcccaagaatcagaacagttcca
gtcactcaggttaagaaacacaatctcacggaagacaggtgtaccaccgtgatggatgaa
ttggatggtacacaagatgttgaagtcttgtatgagcatgtggacttgagacgttcaaag
cgtatgaaaactcagccagaccgctttactagttatgatgcacctaatttcaatcgaacc
tgcaacaagaagaaagaggggaacacatcatctaccaagaataaaaattcacagagtgat
tttagttgggattcaccagttcaggaagaatcaagtgatgaagaggtgctaggaaatcct
tcggtgaagcaaacagtttccgggcctttcatggtcaaggaagacccaaggtccatggaa
ggccagcgcaagaacccagtgaaaagaacaaaatgctcttttcctgtaaaggaaaaacca
acctccgtggaaatagagaagagtacagccaagcaaagaagctcggattctcacattcca
catgcacccgcgaagaacaaggagaagtacagtcgtccacctttatcgtttcaattgaag
ccatttacttcatctcacatcttacgtggcaatagtgaaccagcattctgccaaaagagg
ggcagaaaaagaaagaaacacatgcgcgaaagagaatacaaggaaatgatagaccaatgc
attggaaatatccagtgtgaaatggagagagattctgatttcaagctagatgtacatata
acgaactgtagcggacatgcataccaagaaggggattttacatggccgtcttccactgat
agtcaagaggagaaggatgagtttgaagaactgtggaaacaaatggactatgcattgacc
tcactagcacttcttgagcaaaagcagatgcaagattcagaagccactcatgagagcaat
actgatttaggaaaaggaggagaacgttgtcatcatgactgcatactggatgaacagctt
ggtctaacctgcagattgtgcaacgttgtgtgcactgaggcaaaggatatctttccacca
atgtttgctggtaaggaccatgagaggcctggatggagtgaattttctcaagatgaacat
gtgcttgattcttcttttcttgagatctgcgcacccgaattctccaaatttaagggatct
gggaatgtgtgggcttcgatcactgatgttgaaccaaagctacatgctcatcaaagaaaa
gcatttgaatttatatggaaaaacttggcagggtcattacagcttgaagaaatggatgat
tcaacagcgagtagaggtggctgtgtggttgcacatactcctggagcgggtaaaacactg
ttgctgatctcatttcttgtcagttacttgaaagttcacccaagaagccgaccattggtg
cttactccaaaagctgcaatccatacatggaggagagagtttgagacatggggcatttcg
cttcctttacatgtgctccactactctaaccgaagaggcaaagcaatggggactcttact
tcaaaaatgcacgcgattttgaagaacttccaccaaccatcctggaaaatgatgcggatg
atggatagtctggataaattgcgcaagtggcatgagaatccaagcattctcctcatgaca
tatccttctttcttagcgcttacaaaagaagacacaaaactgcagcatcgggcgttcatg
gcgaaagttctggtgaacaaccctgggctacttatcctcgatgaagggcacaacccaaga
ggcaacaaatcaaagttgagaaagctattaatgaaggtgaagactgaatttagaattctc
ttgtcgggtacagtcttccagaacaacttcgaagagtatttcaacaccttatctttggct
agacctcgttttgtcagtgatgttatgacggcgctagttccagaagcggaaagggagaca
cggaacaggactggtaaacatcaagaagcactggcaaggcgtatttttgtggaaaaagtg
gggcaaaagattgagtctagtagcatacatgacagagtggatggcatctctttgttaaac
aagcttacttgtggattcatcgattcatttgaaggtacaaaagagaacaatcttccaggg
atacgtgtgtatacccttttcatgaaacccactgacatacaggaagaggtgctcacaaaa
gtaacaatgcccgtaccgggcactgcccgttatcctctggaggttgagctgctcatcaca
attgcttctatccatccttgtcttataaaaacaaccaagtgtgctagcacttactttacc
ccagaagaagtagctagagttgagaagtacaagcagaagtatgctgttggttgcaaaaca
aaatttgtgattgatcttctgcacgagtcctcattcagaggggagagggtgctgatattt
tgtcacaatgtgtccccaataaactttctcgtcaagctgatagagattgtttttggatgg
tgtcttggggaggaagtccttgtgttgcaaggtgatcaagagctccctgtgcgctcggat
gtcatggataaattcaacggtgacaaaaagggaaagaggaaggtgctgattgcttcaaca
acagcctgtgccgagggtattagtctgaccggtgcatcaagactagtgatgctggattca
gagtggaaccattcaaagacaatgcaggcgatagcaagggcattccggcctgggcaggag
agaatggtatatgtctaccttcttgtggcatctggtacatgggaggaagataaatacaac
agcaacaggaggaaagcttggattgcaaaaatggtcttctttggacgttatgttgacgaa
ccattgcgaaaccatgtgactgaaatcgatgacgaagttctgaaggagctggctgatgaa
gatgagaccaaaactttccataagatagtgaagcaggactga
DBGET
integrated database retrieval system
