Setaria viridis (green foxtail): 117836152
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Entry
117836152 CDS
T07951
Name
(RefSeq) uncharacterized protein
KO
K13114
pinin
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117836152
03015 mRNA surveillance pathway
117836152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117836152
03041 Spliceosome [BR:
svs03041
]
117836152
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117836152
Spliceosome [BR:
svs03041
]
Complex C
Other components
EJC/TREX
117836152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
117836152
NCBI-ProteinID:
XP_034571418
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All DBs
Position
9:7792337..7796521
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AA seq
409 aa
AA seq
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MAAATEKTAEDIRRELQELQRQHREITERLRDPRGLRRGVPGAGPVPGGPRPLRGFVRPA
VVAESGDQPAQKRRLLSAVVKVDGAETNEEGEKAAEAEGREEGSGAAEAGDRRGVSNGGF
RRDGGLRMPRRVDYNSLPEPAPRELPKNDDPNMVRRNKRMLGQLLVGTLEKFQQEDKKLS
NSEAFLRRSETQRKAEQKVREESERLRQQEREQIAEKRKRDMMLRARVAAKAEEKRLELL
YMQWTEHHKKLSNFLRTKAEPPIYYMPAKPIIDDPIIVEQNKEKVFEEWKSVRRAELTQF
QKQVEEQYLSNVERQLERIQNARNARRANGPANMQEMDKELDTHRAEHGPKTRRVPEEGG
GNDEDEDVEDMAAEDELMDEVLGINEDPSKPSEEAATDGGEPHAPEEAQ
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcgacggagaagacggcggaggacatccgccgcgagctacaggagctccag
cgccagcaccgcgagatcaccgagcgcctgcgggatccccgcggccttcgccgcggagtc
cccggcgctggtcctgtacctggagggccccgcccgctccgcggcttcgtgagacctgcc
gtggttgcggaatcgggggatcagcccgcgcagaagcggcggctgctatcagccgtggtt
aaggtcgatggcgctgaaactaatgaggaaggtgaaaaggctgctgaggcggaggggcgt
gaggagggttcaggtgccgctgaagctggtgacaggaggggtgtcagcaatggtgggttc
aggagagatgggggcctgcgtatgccgaggagggtggactataattcactgccagagcct
gctccaagggagctccccaagaatgatgatccaaatatggtgagaaggaataagaggatg
ttgggccagcttctcgttggtacattagagaaatttcagcaagaggacaagaaattatcc
aactccgaggcttttctgcgcagatcagagacacagcgaaaggctgagcaaaaggttcgt
gaggaaagtgaaaggttgcgacagcaggagcgagagcaaattgcagagaagcgtaagcgt
gacatgatgcttcgagctcgtgtagctgctaaggcagaagaaaagaggctggagctcttg
tacatgcagtggactgagcatcataaaaagctgtccaattttttaaggacaaaagctgaa
ccacctatttactacatgccagctaaaccgatcattgatgatcctattattgttgagcag
aacaaggaaaaggtatttgaagaatggaaatctgtgcgcagggctgagctgactcagttt
caaaagcaagttgaggagcaatatctctccaatgttgagaggcagttggagagaatccag
aatgcccggaacgctcggagggcaaacggtcctgctaacatgcaagaaatggacaaggag
ctggacacgcacagagcggagcatggtccgaagactcggcgagttcccgaggaggggggt
ggcaatgatgaggacgaggatgtggaggacatggcagcagaagacgagctgatggatgaa
gttctgggcatcaacgaggacccgtccaagccatctgaagaagctgccactgatggtggc
gagccgcatgcacctgaggaggcacaatag
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