KEGG   Setaria viridis (green foxtail): 117836152
Entry
117836152         CDS       T07951                                 
Name
(RefSeq) uncharacterized protein
  KO
K13114  pinin
Organism
svs  Setaria viridis (green foxtail)
Pathway
svs03013  Nucleocytoplasmic transport
svs03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:svs00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    117836152
   03015 mRNA surveillance pathway
    117836152
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:svs03019]
    117836152
   03041 Spliceosome [BR:svs03041]
    117836152
Messenger RNA biogenesis [BR:svs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     117836152
Spliceosome [BR:svs03041]
 Complex C
  Other components
   EJC/TREX
    117836152
SSDB
Motif
Pfam: Pinin_SDK_memA Atrophin-1
Other DBs
NCBI-GeneID: 117836152
NCBI-ProteinID: XP_034571418
LinkDB
Position
9:7792337..7796521
AA seq 409 aa
MAAATEKTAEDIRRELQELQRQHREITERLRDPRGLRRGVPGAGPVPGGPRPLRGFVRPA
VVAESGDQPAQKRRLLSAVVKVDGAETNEEGEKAAEAEGREEGSGAAEAGDRRGVSNGGF
RRDGGLRMPRRVDYNSLPEPAPRELPKNDDPNMVRRNKRMLGQLLVGTLEKFQQEDKKLS
NSEAFLRRSETQRKAEQKVREESERLRQQEREQIAEKRKRDMMLRARVAAKAEEKRLELL
YMQWTEHHKKLSNFLRTKAEPPIYYMPAKPIIDDPIIVEQNKEKVFEEWKSVRRAELTQF
QKQVEEQYLSNVERQLERIQNARNARRANGPANMQEMDKELDTHRAEHGPKTRRVPEEGG
GNDEDEDVEDMAAEDELMDEVLGINEDPSKPSEEAATDGGEPHAPEEAQ
NT seq 1230 nt   +upstreamnt  +downstreamnt
atggccgccgcgacggagaagacggcggaggacatccgccgcgagctacaggagctccag
cgccagcaccgcgagatcaccgagcgcctgcgggatccccgcggccttcgccgcggagtc
cccggcgctggtcctgtacctggagggccccgcccgctccgcggcttcgtgagacctgcc
gtggttgcggaatcgggggatcagcccgcgcagaagcggcggctgctatcagccgtggtt
aaggtcgatggcgctgaaactaatgaggaaggtgaaaaggctgctgaggcggaggggcgt
gaggagggttcaggtgccgctgaagctggtgacaggaggggtgtcagcaatggtgggttc
aggagagatgggggcctgcgtatgccgaggagggtggactataattcactgccagagcct
gctccaagggagctccccaagaatgatgatccaaatatggtgagaaggaataagaggatg
ttgggccagcttctcgttggtacattagagaaatttcagcaagaggacaagaaattatcc
aactccgaggcttttctgcgcagatcagagacacagcgaaaggctgagcaaaaggttcgt
gaggaaagtgaaaggttgcgacagcaggagcgagagcaaattgcagagaagcgtaagcgt
gacatgatgcttcgagctcgtgtagctgctaaggcagaagaaaagaggctggagctcttg
tacatgcagtggactgagcatcataaaaagctgtccaattttttaaggacaaaagctgaa
ccacctatttactacatgccagctaaaccgatcattgatgatcctattattgttgagcag
aacaaggaaaaggtatttgaagaatggaaatctgtgcgcagggctgagctgactcagttt
caaaagcaagttgaggagcaatatctctccaatgttgagaggcagttggagagaatccag
aatgcccggaacgctcggagggcaaacggtcctgctaacatgcaagaaatggacaaggag
ctggacacgcacagagcggagcatggtccgaagactcggcgagttcccgaggaggggggt
ggcaatgatgaggacgaggatgtggaggacatggcagcagaagacgagctgatggatgaa
gttctgggcatcaacgaggacccgtccaagccatctgaagaagctgccactgatggtggc
gagccgcatgcacctgaggaggcacaatag

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