Setaria viridis (green foxtail): 117836155
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Entry
117836155 CDS
T07951
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117836155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117836155
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117836155
mRNA degradation factors
5'-3' decay
Decapping complex
117836155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
117836155
NCBI-ProteinID:
XP_034571427
LinkDB
All DBs
Position
1:complement(36114222..36122059)
Genome browser
AA seq
1337 aa
AA seq
DB search
MASPTGNPNPNPNPPFELGKLFRPPNPMPTATATAATIFPGAAGGPAGPPPPSGPYSYPP
VTPPFHRGPYLHYPQDPHAMPRPVVSFPMPNPNLNPNPNANPNAAVPGPNPGVRLMQLLG
NSGPTQLETAVSMPPPTSEFAQPLPAMPSAPPARMLSSTSSKVPRGRLLGGGERAVHDID
SRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSL
LRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWRIDEGPDDENKPQITGKIEIAIQIVGE
VEAYHPRICWHSHKQEILFVGIGNCVLRIDTTRVGRGRDFAVEEPVKCHLEKLIDGVRLV
GKHDGDVTDLSISQWMSTRLASGSKDGMVKIWDDRKPNPLSILKPHDGQPVYSVAFLTAP
ERPNHINLITAGPLNREIKIWASTNEDGWLLPSDSESWNCTQTLELVSSLEPRVEEAFFN
QVAVLPQASLILLANAKKNAIYAVHVDYGPDPASTRLDYIADFTVAMPILSLTGTHESQP
DGEQVVQVYCVQTMAIQQYGLELSLCSPPTADTTGFGRDPAISRVYEAPPEVAGTESSTT
SFTDSYSVSASSKPPTADQSAEFDPKPSAPPLAYSEGDGSVHLPSAPPGSKMELPGSGPA
PGTRDIDQSAFDYTANRNMERDALKRQDTPMPIRKDILGKDELRDGHSDVAMLPNPRLMF
QVGGNATHLVTPSEIISGTLSSAENNDVSKSDGGKIQDVSSRSSRIAELEPKHIDESKPD
QNSGLEAVKEAQIVCEHMEKTRSLEQTVEMISERSVTTDKYSVEESQAPSDKPTLDHTGV
ADENVRKNSLEMPEKSDYSASREQSSSYTKEEKVLHPQTSGQPSPSVSAFNSTESHEPLS
SAYPPISSFPEVAATQGMLQQLIGMQKDMEKKLDTMIPVSVAKESKKLETSLGRTMEKSI
KAHFDAFWVRLQEENTKREKADRERMQQLVTLITSSINKDVPSNLEKSLKKEISSLGPVV
ARAITPIIEKCIASAVSDSVQKGVGDKVCNQLDKSISGKLEATLARQIQMQFHTSVKQAL
QDALRTSFESLLVPAFEQSCKTMFEQVDGTFQKGMSEHTVAIQQQLEAAHTPLALTLKET
INSASSITQSFSSELLDGQRKLLALVASGNAKAHTPNALQPINGPMGGPQEVKVEAPLDP
MKELGRLVSERKFDEAFTMALQRSDVSIVSWLCSQVDLRALLAMVPVPLNQGVLLALLQQ
LAVDINNETSRKVQWMTDVAMAINPADPMIAVHVRPIFDQVYSQLAHQRSLPTMISSDGT
SIRMLMHVINSVLLSYK
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcccaccggcaaccctaaccctaaccccaatccaccattcgagctcgggaag
ctcttcaggccaccgaaccccatgcccaccgccaccgccaccgccgccaccatcttcccc
ggcgctgccggaggccccgcgggcccgccgccgccgtccggtccctactcctaccctccg
gtgaccccgcccttccaccgcggaccctacctgcactacccgcaggacccccacgccatg
ccccgccccgtcgtctccttccccatgccaaacccaaacctcaaccccaacccgaacgct
aaccccaacgccgccgtcccgggccccaaccccggcgtgcgcctcatgcagctgctcggg
aactccgggccgacccaactcgagaccgcagtctccatgcccccgccgacttcggagttc
gcgcagccgctcccggcgatgccatccgcgccgccggcgaggatgctgagcagcaccagt
agcaaggtgcccagggggcggctgcttggcggtggggaacgagcggtacacgatattgac
tcgaggctgcccggggaggcgcagccaccacagctggaggtgacaccgatcacgaaatac
acgtcggatccggggctcgtgctgggcaggcagatcgcggtgaaccgaacctacatcgtg
tatggtctcaagctcgggaacatccgtgtgctgaacatcaacaccgccctccgctccctc
ctccgtggccacacacagagggtgacagacatggctttctttgctgaggatgtccatcgt
ttggcaagtgcgagtgtagatgggcggatatatgtgtggaggattgatgagggacctgat
gatgaaaataaaccacaaattactggaaagattgaaattgccatccaaattgtaggcgaa
gttgaagcttaccatccaaggatatgttggcactcacataagcaagagattctgtttgtt
ggaattgggaactgtgtcttaagaatagacacgactagagtgggaagaggaagagacttt
gctgtggaagaacctgttaaatgtcatcttgagaagcttattgatggtgttcgcttagtt
ggtaagcatgatggtgatgtgacagatttgtccatatctcaatggatgagtacccgcttg
gcctcaggatcaaaggatggcatggtaaagatctgggatgatcgcaaaccaaatccttta
tccattctgaagccacacgatggtcaacctgtttactcagttgcttttcttacagcacct
gagcgtccaaatcatataaatctaattacagcgggtcctctgaaccgagaaattaaaatt
tgggcttctactaatgaagatggttggttgttgccaagtgattctgagagttggaattgt
actcagaccttggaacttgttagttctctggagcctagagtcgaggaggcatttttcaac
caggtcgcagtgctgcctcaagcaagcctgattttgcttgcaaatgctaaaaagaatgct
atttatgctgtccatgttgattatggcccggatcctgcctctactcgcttggactatata
gcagatttcacagttgcaatgcctattttaagccttactgggacacatgaaagccaacct
gatggtgaacaagttgttcaagtctattgtgtccaaacaatggccattcagcaatacgga
ctagagttatcactctgttcgcctcctacagctgatactactgggtttggaagagatcca
gctatttcccgtgtttatgaggcaccaccggaagtggcaggaacagagtcatctacaact
agtttcactgactcttactctgtcagtgcttcaagtaaaccaccgactgctgaccagtct
gcagagtttgatccgaaaccatcagctccaccacttgcatactcagaaggtgatggctct
gtgcatcttccatctgcacctcctggatcaaagatggagcttcctggatcaggaccagca
cctgggactcgtgatatagatcaatcagcttttgactatacagcaaacagaaacatggag
cgtgatgctttgaaaaggcaagatacgcccatgcccatcaggaaggatatcttaggaaag
gatgagctaagagatggtcacagtgatgttgcaatgcttccaaatccccgtttgatgttt
caggttggagggaatgctacacacttggttactccatctgaaattatatcgggcactctc
tcttctgctgaaaacaatgatgtctctaaatctgatggaggaaaaattcaagatgtttct
agtagaagctctcggattgcagaattggaaccaaaacatattgatgagagtaaaccagat
caaaattcaggacttgaagcagtcaaggaagctcagattgtttgtgagcatatggagaaa
actcgttccttggagcaaactgttgaaatgatcagtgagcgctcagtgacaactgacaag
tacagcgtggaagaatcacaagcaccatctgataaaccgacgttggaccatactggcgtt
gctgatgaaaatgtccggaaaaactctctggaaatgcctgagaaaagtgattactctgct
tccagggagcaatcgtcgtcgtatacgaaggaggagaaagttttacaccctcaaacatct
ggtcaaccatctccttctgtgagtgctttcaactcaactgagtcacatgagcctttgagc
tcggcataccctccaatcagctccttccctgaagttgctgccacacaagggatgctgcaa
cagctcataggtatgcagaaggacatggaaaagaagttggatactatgattcctgtatct
gtggcaaaggaaagcaaaaaacttgagacatcattagggcgcaccatggagaaatctatc
aaggctcactttgatgctttttgggttcgtctccaggaagaaaacactaagcgtgaaaag
gctgacagagagcgaatgcagcagttggttactctcattacgagctcaataaataaggat
gttccttctaatctggagaagtcacttaagaaagaaatctcttcacttgggcctgttgtt
gctcgagcaattacacctatcattgagaagtgcatagcctctgctgtttctgattcagtt
cagaaaggggtgggtgacaaggtgtgcaatcagctggacaagtctattagtggaaaactt
gaagctacacttgccaggcaaatccaaatgcagttccacacatctgtaaaacaggctctt
caggatgctttacgcactagctttgaatcattgcttgttccagcatttgaacaatcatgc
aagacaatgtttgagcaagtagatggtacatttcagaaaggaatgtctgagcacacagtt
gctattcaacagcaacttgaggcagcacatactccattagcgttaactttaaaggaaacc
atcaattctgcatcatcaatcacccagagtttttcatcagagttacttgatggccaacgg
aagctattggcacttgttgcttctgggaatgccaaggcacatactcccaatgctttgcag
cccattaatggtcctatgggcggccctcaggaggtgaaggttgaggctccgttagatccg
atgaaagagctgggcagactggtatctgaacgcaagtttgacgaggcatttacaatggcc
cttcaaaggagtgatgtttccatagtatcgtggctgtgctctcaggttgatttgcgtgca
ttattggcaatggtcccagtccctcttaaccagggggtcctcttggccctattgcagcag
ctagcagttgacataaacaatgagacatcacgaaaggttcaatggatgacagatgttgcc
atggcaatcaacccagcggacccgatgattgccgtgcatgtgcgacccatctttgatcaa
gtctacagccaattggcccaccagcggtcactccccactatgatctcatcagatggcacc
agcatccgtatgctcatgcatgtaattaactcggttctgctcagctacaagtga
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