Setaria viridis (green foxtail): 117836305
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Entry
117836305 CDS
T07951
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117836305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117836305
03036 Chromosome and associated proteins [BR:
svs03036
]
117836305
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117836305
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117836305
mRNA degradation factors
5'-3' decay
Decapping complex
117836305
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117836305
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
Sirohm_synth_M
Motif
Other DBs
NCBI-GeneID:
117836305
NCBI-ProteinID:
XP_034571600
LinkDB
All DBs
Position
9:14193991..14198250
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AA seq
513 aa
AA seq
DB search
MHQPRARYPPGYGSGGGGRGGGGGNGGGGGGGGGGGNHNYYGRNPQPQPQHHHHYQHQQP
PQQQQQQQQLAHRNSSHLHQQWLRRDQAPASAAGPGDAAGRTASHLDVDSSSQDWKAQLN
IPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL
ARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMV
STGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQP
SVEALIHFLPPSRQLLMFSATFPVTVKEFKEKYLPKPYVINLMDELTLKGITQYYAFVEE
RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFH
DFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLI
TYEDRFNLYRIEQELGTEIKTIPPQIDLAVYCQ
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgcaccagcccagagcccgctacccgccaggctacggctccggcggcggtggacgtggc
ggcggaggcggcaacggaggaggaggaggaggaggaggcggtggcggaaatcacaactac
tacggccgaaacccgcagccgcagccgcagcaccaccaccactaccagcaccagcagccg
ccgcagcagcaacagcagcagcagcagctcgcgcataggaattcctcgcatctgcaccag
cagtggctgcggcgcgaccaggcccccgcctccgccgcggggcctggagatgctgcgggg
aggacggcgtcgcatctcgacgtagactcgagttctcaagattggaaggcgcaattgaat
ataccagctccagatacacgctataggacagaggatgtcactgcaacaaaaggcaatgag
tttgaagattattttttgaaacgtgaactgcttatgggcatctatgaaaaggggtttgaa
aggccatctcctattcaagaagaaagcattccaattgcactgactggaagtgatattctt
gcaagagccaaaaatggcactgggaagactgctgcattttgcattccagcacttgagaaa
attgatcctgagaaaaatgccattcaagttgttatactggtaccaacaagggaactggct
ctgcagacttcacaagtctgtaaagagcttgggaagtacctgaacattcaagttatggtc
agcactggaggaaccagcttgaaggatgacatcatgcgtttgtaccaacctgttcattta
ctcgttggtactcctggccgaatactggatcttaccagaaagggcatttgtgtgctaaaa
gattgttcgatgctcgtcatggatgaggctgacaagctattagctccagagttccagcct
tctgtagaggcgcttattcatttccttccacctagtcggcaactgttgatgttttcggca
acatttcctgtaactgtcaaggaattcaaagagaaatatctgcctaaaccttacgttatt
aatcttatggatgaactgaccttgaaaggaatcactcaatactatgcttttgttgaagaa
aggcagaaagtccattgcctgaatacacttttctctaagcttcaaattaatcaatccatt
atattctgcaactctgttaatagagttgagctattggctaagaaaataactgaacttggt
tattcatgcttctacattcatgctaagatgttgcaagaccacagaaaccgagtgtttcat
gattttcgcaatggtgcttgcagaaaccttgtgtgtacagatctgtttaccagaggcatt
gacatccaagctgttaatgtggtcattaattttgacttccccaagacctccgagacatac
ttgcacagggttggtcgttctggtcgatacgggcaccttggtttggcagtgaacttgatc
acttatgaggaccgtttcaacttgtataggattgagcaagaactcggaacagaaattaag
acaatacctccacagatcgacttggctgtatattgccaatga
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