Setaria viridis (green foxtail): 117836507
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Entry
117836507 CDS
T07951
Name
(RefSeq) nuclear pore complex protein NUP93A
KO
K14309
nuclear pore complex protein Nup93
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117836507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117836507
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117836507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
TPR_14
TPR_8
TPR_2
TPR_12
Clathrin
TPR_1
KwaB
Motif
Other DBs
NCBI-GeneID:
117836507
NCBI-ProteinID:
XP_034571838
LinkDB
All DBs
Position
9:44047995..44055212
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AA seq
872 aa
AA seq
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MAGVGGSGGGGGGDTEMGGWTGLLHSSTKLLEQAAPTPHFPPLQRNLDQLEALSTKLKAK
TIRAEAPSQSLSATRLLAREGINAEQLARDLKSFELKTTFEDVFPSEATSVEEYLQQLHE
VAIVSSIQEAQKDNLRSFNNYMMQVLEDDWQKEKRDFLQSLSRLSTLPKRNTNISTSGLA
RPALMPPSTSSPHASSGLPSAGVMPIPNKTIIENKSSVYAGVVRDLNEARGRSLPFNPAT
AFRAAYESLSVDAVGTKSVTMQKMWHLIQALVGEGLTHRNVSRKMSLVIGARRHLEWGHE
KYILETINSHPALAALGGSVGNLQKIRAFMRVRLRDQGVLDFDATDLRRQPPVDTTWQQI
YFCLRTGYYDEARQVAQSSRAAHNFAPLLADWISTNGAVSQDTALAASEECDKMLRMGDR
PGRPGYDRKKLLLYAIICGCRRQIDRLLKDLPTLFNTIEDFLWFKLSALREHNNASSSSV
LNEGLVPYTLDDLQSYLNKFEPSYYTKSGKDPLIYPYVLFLSIQLLPAILYLSKEIGEDG
YHVDAVHISIALADHGVLPDGVGSGQKIGVMDACAEAASIIRQYGSIYLRSGNIDLALEY
YAQAAAAMGGGEVSWIGQGNADQQRQRSLMLKQLLTEILLRDGGIQLLLGPSGMGEEGEL
KKYMMDWRSRQQFLLEAAHRCQEAGLYDKAVEIHKRVGDFAMALQIINKCLSDAVCAMAR
NMLDGESRATALIHSGNEIMETARYSSETSVQDKDLISEQQTVLRQLEAILHIYRLARAG
QTVDALRETIRLPFLHLDPQSPNVTVDIFRNLSPHVQACIPDLLKVALNCIDNVRDTDGT
LRAVKSKIANLVANNMSRNWPQDLYQKVAQCI
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgtcggcggcagcggtggcggaggcggcggagacacggagatgggcgggtgg
acggggctcctccactcctccaccaagctcctcgagcaggccgcgcccaccccgcacttc
cctccccttcagaggaacctggaccagctcgaggcgctctccaccaagctcaaggccaag
accatccgcgccgaggcgccgtctcagtcgctttccgccaccaggttgctagcgcgcgag
gggatcaatgctgagcagctcgccagggatctcaagtcattcgaactcaagacaaccttt
gaggatgtttttccatctgaagcaacctctgttgaggagtacctgcagcagcttcatgaa
gtggccatagtttcatccatccaagaagctcaaaaggacaacttaaggagttttaacaac
tacatgatgcaagttcttgaggatgactggcagaaagagaagagagacttcttgcagagt
ctaagccggctttctacattacccaaaagaaacacgaatatctcaaccagtggattggct
cgccctgctttgatgccaccatcaacttcgagtcctcatgcttcatcaggcctgccctct
gcaggggtgatgcctatacctaacaagactattattgaaaataaatcttcagtttatgct
ggggttgtaagggacctcaatgaggctagaggacgcagtctaccttttaatcctgctacg
gctttcagggctgcttatgagtcattatctgttgatgctgttggcacaaaatcagtgacg
atgcagaaaatgtggcatctaattcaggcattagttggggaagggttgacccatcgaaat
gtttcaagaaaaatgtcactagtgataggtgcaagacgccatctcgagtggggtcatgaa
aagtacatacttgagacaatcaacagccatccagctcttgctgctcttggtggatctgtc
ggcaatcttcagaagattcgggcattcatgcgggtacggctgcgggatcaaggtgtgcta
gatttcgacgcaactgatctacgcagacagcctccagtggatacaacctggcagcagatt
tatttctgcttgagaaccggatattatgatgaagcaagacaagttgcgcaatcatctcgt
gctgcccacaactttgccccactgcttgcagactggatttctactaatggtgccgtatcg
caagatactgctctggcagcttctgaggaatgtgataaaatgctcagaatgggtgatcga
ccagggcgtcctggttatgacagaaagaagttgctgctgtatgccataatttgtggttgt
cgacggcaaattgacagactgctaaaagatctgccaacgctttttaatactatagaggat
ttcttgtggtttaagttgtcagctctgcgggaacacaacaatgcatcttcttctagtgtt
ttgaatgaaggcttggtgccttatacactggatgatctgcaaagttacttgaacaaattt
gagccgtcatattatacaaagagtggaaaagatcccttaatctatccctatgtcctgttt
ttaagcatccaattactcccagcaattctttatctgtctaaagaaattggagaggatgga
taccatgttgatgctgtgcatatttcaattgctttagctgatcatggtgttctccctgat
ggtgttggatcaggccagaagataggtgtcatggatgcttgtgcagaggctgccagcata
atacggcagtatggctctatttacttgcgtagtggcaatattgatttagccttggagtat
tatgcgcaagctgctgctgcaatgggtggaggagaggtatcatggattggtcaagggaat
gctgatcagcagcgacaacgaagtttgatgttgaagcaactcctgacggagatattacta
agggatggtggcatacaacttctgcttggtccaagtggaatgggggaagaaggggaacta
aagaagtatatgatggattggagaagcaggcagcaatttttacttgaagcagcccatcgg
tgtcaagaggcagggctctatgacaaagcggtagaaattcataaaagggtaggagatttt
gccatggcacttcagataataaacaagtgcctgtccgatgctgtctgtgccatggcacgc
aatatgttagatggtgagagtcgcgctacagccctaatccattctggcaatgagattatg
gagacagccagatattcttctgaaaccagcgttcaagacaaggatcttatttccgagcaa
caaactgtactgagacagcttgaagctattctccatatttataggctagctcgagctgga
cagactgtagatgctttgagggaaaccatcaggctcccattccttcatttggacccccag
tctccaaatgtgactgttgatattttcaggaatttatcaccccatgttcaagcttgcata
ccagatctcctgaaggttgctctgaattgcattgacaacgttagggatactgacgggacc
ttgcgtgctgtcaagtccaagattgcaaacctagtagcaaacaacatgagccggaattgg
ccacaagatttgtatcagaaggttgcacagtgcatataa
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