Setaria viridis (green foxtail): 117836770
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Entry
117836770 CDS
T07951
Name
(RefSeq) endoribonuclease Dicer homolog 3b
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
svs03036
]
117836770
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117836770
microRNA pathway
RISC loading complex
117836770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
dsrm
AAA_22
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
117836770
NCBI-ProteinID:
XP_072147281
LinkDB
All DBs
Position
9:complement(15506938..15518643)
Genome browser
AA seq
1633 aa
AA seq
DB search
MAAAAAMSEDADPPPPPPPPAQLPPPRRPHKLLQPRGYQVEVFAAALRGNTIAVLDTGSG
KTMVAVMLAREHARRARAGEAAPRRIVAFLAPTVHLVHQQFEVIREYTDLDAVECHGASG
VGDWNARQWKEAIGTKEIVVMTPQILLDALRHAFLTMSVMSLLIFDECHRACGNHPYSRI
MKEFYVDSDWRPTIFGMTASPVATKGASTIGDCEAQIAQLELILDAKVYIVEDRNELERF
SPGATIVNKYYDPYLFDLDDLESKLQTLFEELDGLLVSLQESAPNKFEDTDSILEMSRKS
LSRYHGKILYGLNTLGPIVTLEVVKIYNESINAVGDSEDCLFSKASQNLQVSYFKEALFL
IEEILPQGYEELMKSESGSAELTRRGYISSKVETLINIFKSFGSSEEVLCLIFVERIMTA
KAVERFMRGIENFSRFSISYLTGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEG
IDVPNCSCVIRFDLPRTVCSYVQSRGRARRSSSSYVLMIERGNLVQQQHIFRIIRTEYYV
KNFALHKSPNTPSHDLPLEEKYIYHVDSTGATITADCCVNLIHKYCEKLPKDRYYMPKPS
FDVGLKDGSYQCTLTMPPNAAFRSIVGPQSSTCNLAKQLVCLEACKKLHQLGELNDHLVP
LTEEPTDIDTTVTDGKCLSGPGTTKRKELHGTINVHGLSGNWIHGSETATLNTYRFDFVC
DQEGEIYAGFVLLMESVLDDDVANSKIDLFLIPNKMVYTTVTPCGKIQLNKEQLHKGKLF
QEFFFNGIFGRLFHGSRTSELQREFIFRKGHEIQWSSDNMYLLLPLKHSSYIQRDLNIPW
EAVESCSDAVEQLRNLYMEDGNLSYEKLSPNKRNEGEEIIHLANRSLHFSRVKDSVVLSL
HTGRIYSVLDLILDTTADDSFDEMYNGKASPFASFVDYYHQKYGIVIQHPGQPLLLLKQS
HNAHNLLFSKLKYTDGSTGNPLLLEKEQIHARVPPELLIHIDVTTDILKSFYLLPSVMHR
LQSLMLASQLRSDIGCAQHIPSSLILEAITTLRCCETFSLERLELLGDSVLKYVIGCDLF
LRYPMKHEGHLSDMRSTAICNATLHKHGIWRSLQGYVRDSAFDPRRWVAPGQISLRPCPC
TCGVDTAFVPFSGRYIRDDPSFVVGKPCDRGHRWMCSKTVSDCVEALVGAYYVGGGIAAA
LWVMQWFGIDIRCDMKLVQEVKSNASRLCYLSKLKDIEELEAKLKYNFSVKSLLLEAITH
PSLQELGVDYCYQRLEFLGDSVLDLLITRHLYASHTDVDPGELTDLRSALVSNENFAQAV
VRNNMHNHLQHGSGILLEQVTEYVRFNLECNQKENEFLQQAICKVPKVLGDIMESITGAI
FIDVNFNVDLVWKIVEPLLSPMITPDKLALPPYRELLELCSHLGCFINSKCTSKAEELII
EMTVQLKDELLIAQGHDRNRKSANAKAAARILVDLKKRGLSLKQCLSKAKQLDTVSSELQ
SQLTSLEFRHDFPDVNGNLSLEGLSSVGTTVVLPLKMDKGGPRTALFRLCKILQWPMPKF
EFVEQRFRTPIVLDGVTTTNFNSFVSTITLHIPDVTVITLQGDQRTDKKSSQDSASLIML
EKLQQLKVCMCKM
NT seq
4902 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccgcggccatgtccgaggacgccgacccgccgccgccaccacctccgccg
gcgcagctcccgcctcctcgccgcccgcacaagctgctccagccgcgggggtaccaggtg
gaggtgttcgcggcggcgctgcgcgggaacaccatcgcggtgctcgacaccggctccggg
aagaccatggtcgccgtcatgctggcgcgggagcacgcccgccgcgcgcgcgctggcgag
gcggccccgcgccggatcgtggcattcctcgcgcccaccgtgcacctcgtccaccagcaa
ttcgaggtgattcgggagtacacggacctcgacgcggtggagtgccatggggcatcgggg
gtcggtgactggaacgctcgtcagtggaaggaggcaatcgggactaaggagatagttgtt
atgacgccacagatattgttggacgctctgaggcatgcttttctaactatgagtgtgatg
agcttgctaatatttgatgaatgtcatcgtgcttgtggaaaccatccctactcacgaata
atgaaggagttttacgttgattctgattggaggccaactatatttggaatgacggcatct
ccagttgctacaaaaggagcttctactataggagattgtgaagcacagattgctcaactt
gaactgatattggatgccaaggtatatattgttgaagataggaatgaacttgagagattt
tcacctggtgcaacaattgttaataaatactatgatccttacttgtttgatttggatgat
ctggaatcaaagttacagacactgtttgaggagcttgatggtttgttggttagtctacaa
gaatcagcccctaataaatttgaagacactgatagtatcttggagatgtcaagaaagagc
ttgtccaggtaccatgggaagatattgtatggactgaatactcttggtccaattgttacc
ttggaggtggtgaaaatatataatgaaagcatcaatgcagttggtgattctgaagattgc
ctcttttctaaagctagccagaacttacaggtgtcctattttaaagaagctttatttttg
atagaggaaattctgccacagggttatgaggaactgatgaaatcagaatctggttctgcg
gaactaactaggaggggatatatttcttctaaagtggagacactgatcaacattttcaaa
tcatttggctcatcagaggaagtcctttgcctgatttttgtagaaagaattatgacagcc
aaagctgttgaaaggtttatgagaggaattgagaacttctctcgcttttcaatttcttac
ttaactggagggagtacatcaaaagatgctttgagcccagcagtacagagatttactttg
gatttgttccgagctgggaaagtgaatttgcttttcacaacagatgttactgaagagggc
attgatgtacctaactgttcttgtgtgatacgcttcgaccttcccagaactgtttgtagc
tatgtccagtctcgtgggcgtgccagaagaagcagttcgagttatgttcttatgattgag
aggggaaacttggtgcagcaacaacacatatttcgtataatacgaactgaatactatgtt
aaaaacttcgcactgcataaatcgcccaatactccatcccacgatttgcctctcgaagag
aagtacatataccacgttgactcaacaggagcgactatcaccgcagactgctgtgtcaat
ctaattcataaatattgtgagaagcttccaaaagataggtattacatgccaaagccttcc
tttgatgtgggtctcaaagatgggtcttatcaatgtaccctgacaatgcctcccaatgct
gcatttcgaagtatagttggtcctcaaagcagtacatgtaatttagctaagcagcttgta
tgccttgaggcatgcaagaaattgcaccagctgggagaactcaatgatcatctggtaccc
ttgactgaagaacctactgatattgatacaactgtaactgatggaaaatgtctttctgga
ccaggaacaactaaacgaaaggagcttcatggaactataaatgttcatggtctatctgga
aattggatccatggaagtgaaactgccactctgaatacttatagatttgattttgtttgt
gatcaagaaggtgaaatctatgctgggttcgttctcttaatggaatcagtacttgatgat
gatgtggcaaattcaaaaatagatctcttccttatacctaataaaatggtctacaccact
gtaactccttgtggaaaaattcaactgaacaaagagcagctgcataaaggaaaattattc
caagaattcttcttcaacggtatatttggtagattgtttcatggttcccgaacgagtgaa
ctgcaaagggaatttattttcagaaaaggccatgaaatacaatggagctcagacaacatg
tacttacttttgcctttgaagcattcttcctatatacagcgtgatctaaacataccgtgg
gaagctgttgaatcttgctctgatgcagtggagcagttgagaaatttgtatatggaagac
ggaaatctcagttatgaaaagttaagtccaaacaaaagaaacgagggagaagaaatcatt
catctggccaacagatctcttcatttttccagggtcaaagattcagttgtgttatctctt
cacactgggaggatctattctgttcttgacttgattttagacacaactgcagatgattca
ttcgatgagatgtataatgggaaagcttcaccatttgcttcattcgtggattactaccat
caaaagtatggtattgttattcaacacccaggacaacctttgttgctgttaaagcaaagc
cacaatgcacacaatctacttttttcaaaattgaagtacacagatggttcaactggcaat
cctctgctcttggagaaagagcaaattcatgcccgagtgccacctgaactactcatccac
attgatgtcacaactgatattctcaaatcattttatttactcccttctgtaatgcatcgg
cttcagtctttaatgctagccagtcagcttcgcagcgacattggttgcgctcaacacata
ccgagtagtctgatattggaggctattacaactttaaggtgctgcgagacattttctctt
gagcggctggagttattaggagactcagtactgaaatatgtaataggatgtgacctgttc
ctaaggtatccaatgaaacatgaaggtcatctctccgatatgagatcaacagccatatgc
aatgcaacacttcataaacatggaatatggcgatccttgcagggttatgtacgtgatagt
gcattcgacccacgtcgttgggttgcccctggacagatatcattgcgcccttgtccttgt
acctgcggagtcgatactgcatttgttccttttagtggaagatatatcagagacgatcca
tcttttgttgtgggaaaaccttgtgacagaggtcacagatggatgtgctcgaaaacagta
tctgattgtgttgaagcactagttggagcatattatgttggtggtggcatcgctgctgca
ctttgggttatgcagtggtttggtattgatatcagatgtgatatgaaactagtgcaggaa
gtgaaatctaatgcatctcgtctgtgctatttatcaaaattgaaagatatcgaggaactg
gaagcaaaactgaagtacaacttctcggttaagagccttctgcttgaagccataacacat
ccatctctgcaggaattgggggtcgactattgttaccagcggctggaatttcttggtgat
tctgtactggatctactaatcacacggcatctatatgcttcccacactgatgttgatcct
ggagaattaacagacttacgttctgctttggtcagtaatgagaattttgcacaagcagtt
gtcagaaacaacatgcataatcatctacagcatggatctggaatacttttggagcaagta
acagagtatgtcagatttaatttggagtgcaaccagaaagagaatgaattccttcaacaa
gctatatgcaaagtacccaaggttcttggagacatcatggaaagtattactggtgcaatc
tttatagatgtaaattttaatgttgatctggtttggaagattgttgaaccgttgctttct
ccaatgattacccctgataagcttgcattgccaccttatcgtgagttgctggagttatgt
agccaccttggttgcttcataaattcaaaatgtaccagtaaagcagaagaattaattata
gagatgacggtgcagttaaaagatgaacttctgatagcacaagggcatgacagaaatagg
aagagtgcaaatgcaaaggcagcagcccgaattttggttgacctgaagaaaaggggtctt
tcacttaaacaatgtttatctaaggctaagcaattggacactgtctcctcagaactgcaa
tctcaattgacaagtttggaattccgacatgattttccggatgtgaacggaaatcttagc
ctagaaggtctttcctcagtgggaacaacagttgttcttcctctcaaaatggataaaggt
ggacctcggactgcactttttaggctatgcaagattttgcagtggccaatgccgaaattt
gaatttgtggaacaaaggtttaggactcctattgttctggatggggttacaactacaaac
ttcaatagctttgtttcaaccatcaccttgcacatacctgatgtgacagtcattacactt
caaggtgatcaacgaactgacaagaagagttcacaggattcagcgtcgttgataatgctt
gagaaactccaacaactcaaggtctgcatgtgcaagatgtag
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