Setaria viridis (green foxtail): 117836833
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Entry
117836833 CDS
T07951
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117836833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
svs03400
]
117836833
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
117836833
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
VWA
Motif
Other DBs
NCBI-GeneID:
117836833
NCBI-ProteinID:
XP_034572240
LinkDB
All DBs
Position
9:complement(273897..280615)
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AA seq
687 aa
AA seq
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MARNKEALVLLLDVGPSMHGVLQEVKNICSTLVHKKLVYNRSDEVGIVLFGTKETCNELA
KELGGYKHVTVAHDIKVVDEGTSQALQNLPAGSVPGDFLDAVVVGLDMLIRKYGNTKGKR
RLCLITSAQHRLRDPPEGTKEDQVDTIADQMKRHDIKMECIVFREPGIHHNAVMDENDWL
LYQFRNRSVAKVVQVDSPTSLLGALKTRNVLPVTVFRGDLEVSSNFKIKVWVYKKTAEEK
FPTLKKYSDKAPPSDKFASHEVKVDYEYKSVVEPDKVVPPDQRIKGYLYGPQVVPISSAE
WEAVKFKPEKGVKLLGFTDRSSILRHHFMKDVCLFIPEPGNTKATLAVSAIARAMHQMNK
VAIVRCVWRQGQGNVAFGVLTPNISSVNNIQDSFYFNVLPFAEDIREFQFRSFSSLPSSS
QPTEEQQEAADNLVKMLDLAPPGREVLKPEFTPNPMLERFYSYLDLKAKQPDANVPPLER
CLRRITEPDPDVIDQQTPLIQNLGKAFELKENPKKKKARTQDRLAYTGAGDQAKSVAEPS
AEKDGVLVVLYPPTENIGEIRDLHPVQDFEAMLAKRSSSTWVQKAIEEMQKYTTALLENS
RDGDNYSKALECFAALRKACIIEQEPEEFNQFLTKTYERLKKGDVANFFQLLSSKNISLI
SKGEAPDSDVTEEMARSFYLKQEAASE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcaacaaggaagcgttggttttgctactggatgttggtccttcaatgcatggg
gtgctgcaggaggtcaagaacatatgttcaactctggtgcataagaagttagtttataat
aggagcgatgaggtcggtattgtcctctttggaactaaagaaacatgcaatgagcttgcg
aaggagcttgggggctataagcatgtgacagttgcacatgatattaaagttgtagatgaa
gggacttcacaggctctccaaaacctcccagcaggatctgtccctggtgattttctggac
gctgttgttgttggcttggatatgctgattaggaaatatggtaataccaaaggaaagcgg
cgtctctgtctaatcaccagtgcacagcatcggttaagagatccgcctgaagggactaaa
gaagatcaggtggacaccattgcagaccagatgaaaagacatgatatcaagatggagtgc
attgtcttcagagaaccgggaatccatcataatgctgtaatggatgaaaatgactggttg
ttgtatcagttcaggaatagatcagtagcaaaggtggtccaggttgacagcccaacatct
ctgttgggtgctctgaagacaagaaatgtgcttccagttaccgtcttcaggggagacctg
gaagtgagctccaattttaaaatcaaggtgtgggtctataagaaaacagctgaggagaaa
ttccccactttgaagaagtattcagacaaggctcctccaagtgataaatttgcctctcat
gaagtcaaagtggattatgagtacaaaagcgttgtcgaaccagacaaagttgttccacca
gatcagaggattaagggatacctttatggtcctcaagttgtccctatatcatctgctgaa
tgggaggcggtcaagttcaagccagagaaaggtgtgaagcttctaggatttacagataga
tccagcatattacggcaccactttatgaaagatgtatgcttgtttatacctgaaccaggt
aacacgaaagcaactcttgcagtttccgccatagcaagagcaatgcatcaaatgaacaag
gttgctattgttcgatgtgtgtggaggcaaggtcaagggaatgttgcttttggtgtattg
acgccaaacatttcatcagtgaacaatatccaagattccttctacttcaatgtgctccca
tttgctgaggacatcagagagtttcagttccgatcctttagcagcctgccatcatcgtct
cagcccactgaagaacaacaagaagctgcagataacctagtgaagatgttagacctagca
ccacctggaagagaagtcctcaagcctgagttcacaccaaatcccatgttggagagattt
tacagttaccttgatctaaaggcgaagcagccagatgcaaatgtgccaccacttgaaaga
tgtctaaggaggataactgaacctgatcctgatgtcattgaccaacaaacgccattaatc
caaaatttaggcaaagcctttgagctgaaggagaaccccaagaagaagaaagcacgaaca
caggacagactggcatatactggtgctggtgatcaagctaaatcagtagcagagccctct
gcagaaaaggatggggttttggtggttttatatcctccaacagagaatatcggggagatc
agagatttacatcctgttcaagattttgaagccatgctggcaaagagatctagctcaacg
tgggttcaaaaggcaattgaagagatgcagaagtacacaacagctttgttagaaaattcc
cgtgatggggataattactcaaaggcacttgaatgtttcgctgctctgcggaaagcctgc
attattgaacaggaaccagaggaattcaaccagttccttacaaagacttacgaaagattg
aagaagggtgatgttgccaatttctttcagcttctgtcctcgaaaaatatttcacttatc
agcaaaggggaagcacctgatagtgatgtgactgaagagatggcaagaagtttctatcta
aaacaagaagcggcgtctgagtag
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