Setaria viridis (green foxtail): 117836961
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Entry
117836961 CDS
T07951
Name
(RefSeq) coatomer subunit alpha-3
KO
K05236
coatomer subunit alpha
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
svs04131
]
117836961
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svs04147
]
117836961
Membrane trafficking [BR:
svs04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
117836961
Exosome [BR:
svs04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117836961
Exosomal proteins of bladder cancer cells
117836961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
TPR_COPA_B
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Fis1_TPR_C
Beta-prop_DCAF12
Zn_ribbon_3
Zn_ribbon_19
ENTH
HypA
zf-CHCC
Motif
Other DBs
NCBI-GeneID:
117836961
NCBI-ProteinID:
XP_034572382
LinkDB
All DBs
Position
9:complement(7320212..7325342)
Genome browser
AA seq
1219 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFH
ATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCVAVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPSLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILAAHP
EMNLLAAGHDSGMIVFKLERERPAFCVSGDTVFYVKDRFLRFFEYSTQKEVQVAPIRRPG
SVSLNQSPRTLSYSPTENAVLICSDADGGSYELYIVPKDSAGRSDYLQEAKKGAGGSAVF
VARNRFAVLEKSSNQVLVKNLKNEIVKKSPLPIATDAIYYAGTGNLLCKAEDRVAIFDLQ
QRLVLGELQTPAVKYVAWSTDMESVALLSKHAVVIASKKLVHRCTLHETIRVKSGAWDEN
GVFIYTTLNHMKYCLPNGDSGIIKTLDVPIYITRVVGNNIFCLDRDGKNKLIAVDASEYI
FKLALLRKRYDHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNI
QIAVASAKEIDDKDHWYRLGIEALRQGNVGIVEYAYQRTKNFERLAFLYLITGYLDKVGF
MCKIAGQNNNLMGQFHNALYLGDAKKRVEILENAGQLPLAYVTAVTHGLTEIAERIAAEL
GENAPSLPEGKSHSLLIPPAPLTACGDWPLLRVMRGIFEGGLDATGRAELEEDDEAAGAD
WGDEDLDIIDASEVVANGGDSFVEAEEGEPNEEDGEEGGWDLEDLELPPETETPKAVGNA
RSAVFVAPTPGIPVSQIWTQRSSLAGEHAAAGNFDTAMRLLSRQLGIKNFTPLKPLFLDL
HMGSHTYLRALAAAPVISVAVEKGWNESASPNVRGPPALVFSFSQLEDRLKAAYKATTEG
KFPEALRQFLNILHTIPVIVVDSRREVDEVKELIEIVKEYVLGLKMELKRKELRDDVTRQ
QELAAYFTNCKLQRVHMRLVLASAMALCFKQRNYATAAHFARMLLENSPQEAQAKKARQV
MQACQDKNDSHQLNYDFRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICE
LATVGADASGLLCSPTQLR
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagttcgagacgaagagcaaccgggtgaagggcctgagcttccacccgcgg
cggccatggatcctggcgagcctccacagcggggtgatccagatgtgggactaccgcatg
ggcaccctcctcgaccgcttcgacgagcacgacgggcctgtccgcggcgtccacttccac
gccacccagccgctcttcgtctccggaggtgatgattataagataaaggtctggaattac
aagacgcaccgctgcctcttcacacttcatgggcaccttgactacattcgcactgtgcaa
ttccatcatgagtacccatggatcgtaagtgctagtgatgatcaaacaatccggatctgg
aactggcagtcacgcacctgtgtagccgtgctgactgggcataaccactatgtcatgtgt
gcatctttccatcccaaagaggacttggttgtatcagcatcacttgatcagactgtccgc
gtctgggatatcggagctctgaggaagaagacagtgtcacctgcagatgacatcctccgt
ctcacccagatgaacacagatctatttggaggtgttgatgctgtagtgaaatatgtcttg
gaaggccatgatcgtggtgtcaattgggcctcatttcatccctctttgccactcattgtt
tctggtgcagatgaccggcaagtgaagctatggagaatgaatgacaccaaggcttgggaa
gttgatactttgaggggccacatgaataatgtgtcttgcgtgatgttccatgcaaagcaa
gacatcattgtgtctaactcagaagacaaaagcattcgcatttgggatgccacaaagaga
actggtattcaaacatttaggcgggaacacgaccgcttttggattcttgctgctcaccct
gaaatgaatcttcttgctgctggtcatgacagtggcatgattgtgttcaaactagagagg
gaacgcccagccttctgtgttagtggtgacactgttttctatgtgaaggatcgatttctc
cgattcttcgaatactccacccagaaggaagttcaagtggctccaataagaaggcccgga
tcagttagcttgaaccagtcaccaaggacactatcatacagtccaaccgaaaatgctgtc
ttgatctgttcagatgctgatggaggctcatatgaactctacattgttcccaaggattca
gctggcaggtctgattatttgcaagaggcaaagaagggagctggtggttctgctgttttt
gtggcgcgcaacaggtttgcagtccttgagaagagtagcaatcaagttttggtgaagaat
cttaagaatgaaattgtgaagaaaagcccccttccaattgcgactgatgcaatatactat
gctgggaccggtaacttgctgtgcaaagctgaagaccgggttgccatctttgatcttcag
caaaggctagttcttggtgagctccagacgcctgctgttaaatatgttgcttggtccact
gatatggaatctgttgcacttttgagcaagcatgcagtcgttatagctagcaagaagctt
gtccatcgatgcacattgcatgaaaccatccgtgtgaaaagtggtgcctgggatgagaat
ggcgtgttcatttacactacactgaaccatatgaagtactgtcttcccaatggagacagc
gggatcataaaaacgcttgatgttcctatttacataacaagggttgttgggaacaatatt
ttttgcctagatcgtgatggaaagaacaagctgattgctgttgatgcatcagagtacatt
ttcaagctcgctcttctccgaaaacgctatgaccatgttatgagtatgattaagaactcc
cagctatgtggacaggctgttatttcttatttgcagcagaaaggttttccagaagttgct
ctacattttgtgaaggatgagaagaccagatttaacctagctcttgagagtggtaacatt
caaattgcagttgcttccgcaaaggagattgatgacaaagatcactggtacaggctgggg
attgaggccctgaggcaaggaaatgttggtattgtggaatatgcataccaacggacaaag
aattttgagaggcttgcttttctgtatcttattactggctacttggacaaggtaggcttc
atgtgcaaaattgctggtcagaataacaatttgatgggacagttccacaatgcattatat
ctcggggatgctaagaagcgagttgagatcttggagaatgctgggcagctaccacttgct
tatgttactgctgtcactcatgggctcactgaaattgccgagaggattgctgctgaatta
ggcgaaaatgctccttctctgcctgaaggaaaatctcactcgctgctgatcccccctgca
cctcttacagcctgtggtgattggccattgctgcgggtgatgcgtggaatttttgaaggt
ggactggatgctactggaagggcagagcttgaggaagatgatgaagctgctggtgctgac
tggggtgatgaagacttggatattattgatgcaagtgaggtggtggcaaatggtggtgat
agttttgttgaagctgaggagggtgaaccaaatgaggaggatggtgaggaaggtggctgg
gacttggaagatctggaacttccgcctgaaacagagactccaaaagctgttggcaatgct
cgctctgctgtatttgttgctcctacacctggcattcctgtcagccaaatttggactcag
agatcttctctggctggggagcatgcggctgcagggaactttgacacagctatgcggttg
cttagccgtcagttgggtatcaagaacttcactcctctaaagcccttgtttcttgatttg
cacatgggcagtcacacatacctacgtgcacttgctgctgctccagttatatcagttgct
gttgagaaaggatggaatgagtctgcaagtcctaatgtgagaggccctcctgcacttgtt
ttcagcttctcacaattggaagacagactcaaggctgcctacaaagctacaactgagggc
aagttcccagaagcactgaggcagttccttaacatcttacataccattcctgttattgtg
gtggactcacggagagaagttgatgaagtgaaggaattaattgagatagtgaaagagtat
gttcttggtctgaaaatggagcttaagagaaaggaattgagggatgatgtgacccgtcaa
caagagttggctgcttacttcactaattgcaagcttcagagagttcatatgaggcttgtg
cttgcaagcgctatggctctttgcttcaagcaaagaaactatgctactgcagcacacttt
gcaaggatgcttcttgagaacagccctcaggaggctcaagcaaagaaggctcggcaggtg
atgcaagcttgccaggacaagaatgattctcaccaactgaactatgacttcagaaatcca
ttcgttgtctgtggtgctacatatgttcctatctatcgtggccaaaaggatgtttcctgc
ccatactgtggatcccggtttgttccttccatcgaagggcagctttgtaccatatgcgag
cttgccactgttggggcagatgcctcaggcctcctctgctccccgacacagttgagatag
DBGET
integrated database retrieval system
