Setaria viridis (green foxtail): 117837233
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Entry
117837233 CDS
T07951
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117837233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117837233
03009 Ribosome biogenesis [BR:
svs03009
]
117837233
04131 Membrane trafficking [BR:
svs04131
]
117837233
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
svs04147
]
117837233
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
117837233
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
117837233
Membrane trafficking [BR:
svs04131
]
SNARE
SNARE associated proteins
Others
117837233
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117837233
Exosome [BR:
svs04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117837233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_33
AAA_14
AAA_22
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
ATPase_2
AAA_18
ABC_tran
Parvo_NS1
Viral_helicase1
IstB_IS21
AAA_7
NB-ARC
NACHT
AAA_24
TsaE
Zeta_toxin
Rad17
Vps4_C
DUF815
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
117837233
NCBI-ProteinID:
XP_034572712
LinkDB
All DBs
Position
9:complement(54049099..54052315)
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AA seq
798 aa
AA seq
DB search
MADDAAAASSCPTPTATKKRAANRLVVEEATTDENSVCNLHPATMEELSIFSGDIILLKG
KRRRDTICMAMLDEECGENKIRINKVVRSNLRVRLADVVSVHQCHDARYGAAVHVLPLDD
TVEGITGDLVQAYLKPYFDDAYRPVRKGDLFLVRGGMRSVDFKVVDIKPAAEYCIVANNT
EIVCEGEPVKREDEERLDDVGYDDVGGMRKQLAQIRELVELPLRHPQLFKSIGVKPPKGI
LLYGPPGSGKTLIARVVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNAPSIV
FIDEIDSIAPNRDKTHGEVERRIVSQLLTLMDGLKARAHVIVMGATNRPNSIDPALRRFG
RFDREIDIGVPDEVGRLEVLRVHTRNMKLTEDVDLEVVAKDTHGYVGADLAALCTEAALQ
CIREKMDVIDLDDETIDAEILNSMAITNDHLKTALAGTNPSALRETMVEVPNVSWADIGG
LEGVKRELQETVQYPVEHPDKFEMFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS
VKGPELLTKWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSVGDAGGAGDRVL
NQMLTEMDGMNAKKTVFVIGATNRPDIIDPAMLRPGRLDQLIYIPLPDEASRHQIFKACL
RKSPVAKDVDLGALAKFTAGFSGADITEICQRACKYAIREDIEKEIERERQAKERPDDMA
VDGAEDEEPAQIKAIHFEESMRFARRSVSYADVRKYQAFAQTLQQSRGFGSEFRFSKQPQ
AAEPAATANADAEDDLYD
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgacgcagccgccgcgtcgtcctgtcctactcctaccgctacgaagaagaga
gccgcgaaccggctggtggtagaggaggccaccaccgacgaaaactccgtctgcaacctc
caccctgcaaccatggaggagctctccatcttctccggcgacatcatcctgctcaagggg
aagcgccgccgcgacacgatctgcatggccatgctggacgaggagtgcggcgagaacaag
attaggatcaacaaggtggtccgctccaacctccgggtgcgcctcgccgacgtcgtgtcc
gtgcaccagtgccatgacgccaggtacggggcggccgtccacgtcctccccctcgacgat
accgtcgagggcatcacgggggacctcgtccaggcctacctcaagccctacttcgacgac
gcgtaccgccccgtccgcaagggcgacctcttcctcgtgcgcggcggcatgaggagcgtc
gactttaaggtcgtcgacatcaagcccgccgccgagtactgcatcgtcgcgaacaacacc
gagatcgtctgcgagggcgagcccgtcaagcgcgaggacgaggagaggctcgacgacgtc
ggctacgatgacgtcggcgggatgcggaagcagctggcgcagatcagggagctggtcgag
ctgccacttcgtcacccgcagctgttcaagtcgatcggcgtcaagcctcccaagggcatc
cttctctacggcccgcccggctccggcaagaccttgatcgcccgtgtggtggcgaacgag
accggggccttcttcttctgcataaacgggcccgagatcatgtccaagatggccggcgag
agcgagagcaacctcaggaaggcgttcgaggaggccgagaagaacgctccgtccatcgtc
ttcatcgacgagatcgactccatcgcgcccaacagggacaagacccacggcgaggtcgag
agacgcatcgtctcccagctgctgacgctcatggacggcctcaaggcgcgggcgcacgtc
atcgtcatgggcgccaccaaccgccccaacagcatcgaccccgccctcaggcggttcggc
aggttcgaccgcgagatcgacatcggcgtgccggacgaggtcggccgcctcgaggtgctg
cgcgtccacaccaggaacatgaagctcaccgaggacgtcgacctcgaggtcgtcgccaag
gacacgcacggctacgtcggcgccgacctcgccgccctgtgcaccgaggccgccctgcag
tgcatcagggagaagatggacgtgatcgacctcgacgacgagacgatcgacgcggagatt
ctcaattcgatggccatcaccaacgaccacctcaagactgccctcgccggcaccaacccg
tccgctctacgcgagaccatggtcgaggtgcccaacgtcagctgggccgacattggcggc
ctcgagggcgtcaagcgggagcttcaagagaccgtgcagtaccccgtggagcacccggac
aagttcgagatgttcggcatgtccccttccaagggcgtgctcttctacgggccccccggc
tgcggcaagacactgctcgccaaggcgatcgccaacgagtgccaggccaacttcatcagc
gtcaagggccccgagctgctgaccaagtggtttggcgagagcgaggccaacgtccgcgag
atcttcgacaaggcgcgccagtccgcgccgtgcgtcctcttcttcgacgagctcgactcg
atcgcgacgcagaggggcggcagcgtgggcgacgccggcggcgccggggacagggtcctc
aaccagatgctcacggagatggacggcatgaacgccaagaagacggtgttcgtcatcggc
gccaccaaccggccggacatcatcgacccggcgatgctccgccccggccgcctcgaccag
ctcatctacatcccgctgccggacgaggcgtcgcggcaccagatattcaaggcgtgcctg
aggaagtcccccgtcgccaaggacgtcgacctcggcgcgctggccaagttcacggcgggc
ttcagcggcgccgacatcacggagatttgccagagggcgtgcaagtacgccatccgcgag
gacatcgagaaggagatcgagcgggagaggcaggccaaggagaggccggacgacatggcg
gtggacggcgccgaggacgaggagccggcgcagatcaaggccatccactttgaggagtcg
atgaggttcgcgcggaggagcgtcagctacgcggacgtccgcaagtaccaggcgttcgcg
cagacgctgcagcagtcgcggggattcggcagcgagttccgcttctccaagcagccccaa
gcggcggagcctgctgccacggccaacgccgacgccgaagatgatctttacgactga
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