Setaria viridis (green foxtail): 117837238
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Entry
117837238 CDS
T07951
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117837238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117837238
03009 Ribosome biogenesis [BR:
svs03009
]
117837238
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117837238
Spliceosome [BR:
svs03041
]
Complex A
U2 snRNP components
U2 related factors
117837238
Complex B
117837238
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117837238
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
90S particles
Helicases
117837238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
nSTAND3
SRP54
ResIII
AAA_30
T2SSE
TrwB_AAD_bind
AAA_29
Motif
Other DBs
NCBI-GeneID:
117837238
NCBI-ProteinID:
XP_034572715
LinkDB
All DBs
Position
9:complement(45742909..45746987)
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AA seq
723 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRAATNGAAAAAAGGANPTVNRWNGRPYSGRYFEIL
EKRRTLPVWQQKDEFLRALRDNQTLILVGETGSGKTTQIPQFVLEAEGLGNRSMVACTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLER
YKVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSGAPLMKVP
GRLHPVEIFYTQEPERDYLEAAIRTVVQIHTCEPAGDILVFLTGEEEIEDACRKINKEIN
NMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNED
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTQLGEMMSEFPLDPQMSKMLVISPKYNCSNEILSVSAMLSVPNCFLRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINSRALKSADNVRQQLVRIMTRFNL
KMCSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEW
VIYNEYVLTTRNFIRTVTDIRGEWLIDIAPHYYDLSNFPSCEAKRVLERLYNKRERERAT
NRG
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcggaaggtgagcctcttcgacgttgtcgacgagacctccgtc
tccgccaagctcggccgcgccgccaccaacggcgccgccgccgccgcggcgggcggggcc
aaccccaccgtcaaccggtggaacgggcggccatactcggggcggtacttcgagatcctc
gagaagcgccgcacgctccccgtttggcagcagaaggacgagttcctccgcgccctccgc
gacaaccagaccctcatcctcgtcggcgaaacgggaagtgggaagaccactcagatcccc
caattcgtacttgaggctgaaggcctgggtaaccgttccatggttgcctgcactcagccg
cggagggttgcagcaatgtcagtctccaggcgtgtggccgaggagatggatgttactatt
ggggaggaagtaggttacagcatccggtttgaggattgcagcagccacaaaactgttctc
aaatatttgacagatggtatgcttctgagagaagcaatggcagacccacttttagagagg
tacaaggtgattgttcttgatgaagctcatgagagaacattggcaacagatgttctgttt
gggcttctgaaggaggttctaaaaaatagaccggacttgaagcttgttgttatgagtgct
acccttgaagcagagaaatttcagggttacttcagtggtgcaccattgatgaaggtacca
gggaggcttcacccggttgaaatcttctatactcaagaaccagaaagggactacctagag
gctgctatcaggacagttgtgcaaatacacacgtgtgaacctgctggtgatatccttgta
ttccttaccggagaagaggagattgaggatgcctgtcgtaaaattaacaaggaaattaat
aacatgggagatcaggttgggccagttaaagttgttcctttgtattctacgctgcctcca
gccatgcagcaaaagatttttgaacctgctcctgccccattaaaggaaggaggacctcct
ggaaggaaaatcgttgtgtccacaaacattgctgagacatccttaactatagacggtata
gtttatgtgatagacccagggttttccaaacagaaagtttacaacccaaggattagggtg
gaatccctcctggtgtcaccaatttccaaggcaagtgctcatcagagagctggtcgtgct
ggaagaacgcagcctgggaagtgcttcaggctatacacagagaagagttttaatgaggat
ttgcaaccacagacttacccagaaattcttaggtcgaacctggcaaatacagttcttacc
ttgaagaaactaggaattgatgatttagtacattttgactttatggatcctccagcaccg
gaaactcttatgagggccttagaagttttgaactacttgggggcactcgatgatgaaggt
aacctaacacagttaggtgagatgatgagcgaatttcccctggatccacaaatgtcaaag
atgcttgtcatcagtccaaagtataactgttcaaatgagatcctatcagtttctgccatg
ctatcagtacccaattgcttcctccggcctagggaggctcaaaaggctgctgatgaggcg
aaggctcgatttggccatattgatggggaccatctgacgcttctgaacgtataccatgca
tacaagcaaaacaatgaagatccccagtggtgttacgagaactttatcaattccagagca
cttaaatctgcagacaatgtcagacaacagcttgttcgcatcatgactagattcaatctc
aagatgtgcagcacagacttcaatagtcgtgagtactatgtcaatatcaggaaagcaatg
ctttcaggatatttcatgcaggtcgctcacctggagcggactggacattacttgactgta
aaagataatcaggttgtccatcttcatccctcaaactgtatggaccataagccagaatgg
gtcatctacaatgaatacgtcctgaccaccaggaatttcatccgcacagtcactgatatc
cgtggggaatggttgattgatatcgctccacactattatgatctgagcaatttcccatca
tgcgaggcgaagcgtgttctcgagaggctgtataacaagcgggagagggaaagggccacg
aacagaggctga
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