Setaria viridis (green foxtail): 117837272
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Entry
117837272 CDS
T07951
Name
(RefSeq) ATP-dependent RNA helicase DEAH13
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
svs03009
]
117837272
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117837272
Ribosome biogenesis [BR:
svs03009
]
Eukaryotic type
90S particles
Helicases
117837272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
DHX37_C
HA2_N
HA2_C
AAA_22
ATPase
nSTAND3
PhoH
AAA_19
TNP-like_GBD
Motif
Other DBs
NCBI-GeneID:
117837272
NCBI-ProteinID:
XP_034572759
LinkDB
All DBs
Position
1:36805294..36811057
Genome browser
AA seq
1286 aa
AA seq
DB search
MEDSNALILPCKRKNKGQGKAKDGKKAKEDPKMSKTKLKKLQKLEEEKRKKLLQAQSIDI
LQKHKISEDAYSLLHASGTIGQVETLKEKRRRAMQLSKAGLDVPEELSLFKRNGDQKFSE
NSDPVEHILPPKFVEPVKSEDPGRLHEKNMKNDPRKAMECQPKMDVGVSIPEPKTEEPSD
NGHLLANQKIQSSIPSCSGSELNLQDKEPGQGEAAMQECINPPIVVPVSRPHEVEKARRD
LPIIMMEQEIMEAIYENSIVILCGETGCGKTTQVPQFLYEAGFGTSDRADRRGMIGITQP
RRVAVLATARRVSYELGLKLGREVGFQVRHDKLVGSNCSIKFMTDGILLRELQGDFLLKR
YSVIILDEAHERSLNTDILIGMLSRIIKGRKNLYVDQQDKIRSGVKIKPEDMISQLKVVL
MSATLQLKDFISNRRLFDVIPPAVKVPVRQFPVTVHFSKRTHDDYLGLAYKKVMSIHNRL
PPGGILVFVTGQREVDYLCKKFRRASKVQTAKKPEKVDGDDNGPFPEVDDKEIFEAYDID
RNKSEHPDDIFSSYHDDDDMDPGPNSFSSDNETESELDTDTDDEESFTYETTEEDAPVLS
FLKDAENSSVLKASFGALSGISGVPESVEKSSDATSEEKSSPSVSCFGKCTERMPVSHGR
LRVLPLYAMLPASQQLQVFQDIPKGERLVVVATNVAETSLTIPGIKYVVDTGKEKVKNYD
HATGMSSYEVQWISKASASQRAGRAGRTGPGHCYRLYSAAAYGKDDLFPEFAEPEIKKIP
VEGIVLMLKFMGIHKVVNFPFPTPPNKESLVEAERCLKALEALYSHDDYDGKLTPMGKAM
AQYPMSPRHSRLLLTVIKILKSQQGFARSNFILGYAAAAASALSFTNPFLKQLDESDING
ESEEHNTNPEANDPCERKRRKKHNAMVREAQEKFSNPSSDALTIARALQFFELSENPVEF
CRINSLHLKTMEEMSKLRKQLLRLIFHHSKFCKEFAWNSGDSDDVEQAWRNESSKRPLQM
NEEELLGQGICAGWADRVARRNHTYSRASGDDRKVRAIRYQSCALNDTIYLHRSSSVAQV
APELVVYSELLSTKRLYMHGVTTIKPGWLLKYASSLCTFSAPLEDPKPYYDPVNDQVYCY
VSPVFSRHNWQLPLHSLPIKDNTSRLQVFVCALLKGDVLPCLRNAKDFLALSPSFVFGPA
SQRRVGDLLDRMHIKQKSKIGKKLIDSRAALRDAWNADPNFLYPEIKAWYQDKFHSQFDL
KWEQMHQEVLLEGHELFPKRSKKVKG
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggaggatagcaacgccctgattttgccctgcaagaggaagaacaaggggcaggggaaa
gccaaggacggtaagaaagccaaggaggacccaaagatgagcaagactaagctaaaaaag
ctgcagaaattggaggaggaaaagcgaaagaagctgctgcaggctcaaagcattgatatt
ttgcagaagcacaagatctcagaagatgcatattcactgctgcatgcttcagggactatt
ggtcaagttgagactttgaaagaaaaacgtaggcgtgccatgcagttgtccaaggctggt
ttggatgttccggaagaactctcgctattcaagagaaatggtgatcagaaattttctgaa
aacagtgaccccgtggagcacattttgccacccaagtttgttgagcctgtaaaaagtgag
gatcctggtaggttacatgagaaaaacatgaagaatgatccaaggaaagctatggaatgc
caaccaaagatggatgttggagtaagcattccagagcccaaaactgaggagcctagtgat
aacggccacctgttggcaaatcagaaaattcagtcttcaattccaagttgctctggatca
gagctaaatttgcaggataaagagccaggacaaggggaagctgccatgcaggagtgcata
aatcctccaattgttgtgcctgtgtcaagaccgcatgaggttgagaaggcaaggagagat
ctcccaataataatgatggagcaggaaataatggaagctatttatgaaaattctatagta
atcctttgtggagaaacaggctgcggtaaaactactcaggtccctcagttcctgtatgaa
gctggctttggcacaagtgatcgagctgacagaagagggatgattgggatcacccaacca
cgacgtgtcgctgtccttgccacagctaggagggtgtcctatgagttaggacttaagctg
gggagggaagttggttttcaagttcggcatgacaaattggtgggaagtaattgctccatc
aagttcatgacagatggtattttgctgcgagagctccagggtgattttctgttgaagcgc
tattcggtgatcatattggatgaggcacatgaaaggagcttgaacacagatatacttatt
gggatgctttctagaattattaagggtcgcaagaatttatatgtagatcagcaggataaa
atacgatctggagtgaaaatcaagccagaagatatgatcagtcagttgaaagtggtgctc
atgagtgctactctacaattgaaggacttcatttctaataggagattgtttgatgtgatc
ccaccagctgttaaggtacctgtgcggcagtttccagtaacagttcacttctcaaagagg
acacatgatgattatttagggctagcttataaaaaggttatgtcaatccacaataggctt
ccaccaggtggaatccttgtatttgtcactggacaacgagaagtggactacttgtgtaag
aaattccgaagagcgtccaaggtgcaaactgctaagaagcctgaaaaagttgatggcgat
gataatggtccgttcccagaagtagatgataaggaaatttttgaagcatatgatattgat
aggaacaaatctgagcacccagatgacatattttcttcatatcatgatgatgatgatatg
gatcctgggccaaattctttttcttctgacaatgaaacagaaagcgaattggatactgac
actgacgatgaagagtcttttacatatgaaaccacggaagaggatgctccagtattatca
tttttgaaagacgctgagaactcatctgtgttgaaggcgtcatttggagctctgtcagga
atatcaggagtgccggaaagtgttgagaaatcaagtgatgctacaagtgaagaaaagtct
agtccctctgttagttgtttcggtaaatgtacagaacgtatgcctgtatcgcatggcaga
ctccgtgtcttgccactttatgcaatgttaccagcttcacagcagcttcaagtgtttcaa
gatatccctaagggggaaagattagttgtggtggcaactaatgtcgcagaaacctcttta
acaattcccggcataaaatatgtagttgatactgggaaagaaaaggttaagaattacgac
catgctactgggatgtcaagttatgaagtccaatggataagcaaggcatcggcatcccag
cgtgctggaagagctggaagaacagggcctgggcactgttaccgtctctactcagctgca
gcatatggtaaagacgatttatttcctgaattcgctgaacctgagatcaagaaaattcca
gttgaaggcattgtccttatgctcaagtttatgggtatccataaggttgtgaactttcct
ttccctactcctccaaacaaggaaagtttggttgaagctgagcgttgcttaaaggcattg
gaagcactttatagccatgatgattatgatggaaaacttacaccaatgggaaaggctatg
gcacaataccccatgagcccacgacattctcgtcttcttctgacagtgattaagattttg
aagagccagcaaggctttgctagatctaacttcatactgggatatgctgctgctgctgca
tcagcgttgagttttactaatccatttctcaagcagttggatgaaagtgatattaatggc
gaatcggaagaacataacactaatccagaagctaatgatccatgtgaaaggaaaagacgg
aagaagcacaatgccatggttagagaggcacaggaaaaattttctaaccctagcagtgat
gctttaaccattgcccgtgccctacaattttttgagttgtcagaaaaccctgtggaattc
tgcagaataaattcacttcatctcaaaacaatggaagagatgtcaaaattgagaaagcaa
cttctccgtttaatatttcaccacagcaaattttgcaaggaatttgcttggaattctgga
gattctgatgatgttgagcaggcctggaggaatgagtccagtaaaagaccattgcaaatg
aatgaagaggaacttcttgggcaaggaatctgtgctggatgggctgatagagttgcaagg
agaaatcacacctattccagagcatcaggagatgatcgtaaggttcgagctattcgttat
caatcttgcgcgcttaatgataccatatatctgcaccgatcatcgtctgttgcccaagtt
gccccagagcttgtagtttactcagagctacttagtacaaagaggttatacatgcatggt
gtaaccactataaagccagggtggcttttaaagtatgccagttctctatgcaccttctct
gcgccattggaagatccgaaaccctattatgaccccgtgaatgaccaagtctattgttat
gttagtccagtcttttctcgacataattggcagcttcccttgcatagtttacctatcaaa
gacaacaccagtcgcctgcaggtatttgtgtgtgctttgcttaagggggatgtcttgcca
tgtctaaggaatgcgaaagatttcctggcactgtcaccatcttttgtcttcgggcctgcc
agccaaagaagagttggagatcttcttgacaggatgcatattaaacaaaaatcaaagatt
ggtaaaaaattaattgacagccgagcagcactgagagatgcatggaatgctgatccaaat
tttctctatcctgagataaaggcgtggtaccaggataaattccatagccagtttgactta
aaatgggagcagatgcaccaagaggttcttcttgaggggcatgagcttttcccaaagagg
tccaagaaagttaaaggctag
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