Setaria viridis (green foxtail): 117837343
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Entry
117837343 CDS
T07951
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117837343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117837343
03036 Chromosome and associated proteins [BR:
svs03036
]
117837343
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117837343
Coactivators
SAGA/TFTC/STAGA complex
117837343
Chromosome and associated proteins [BR:
svs03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
117837343
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
DUF7325
SCIMP
Motif
Other DBs
NCBI-GeneID:
117837343
NCBI-ProteinID:
XP_034572837
LinkDB
All DBs
Position
9:40020944..40030466
Genome browser
AA seq
916 aa
AA seq
DB search
MDPIMKLLEDDEDESLHSGADVEAFTAALNREVEASASTSSTISAPPAASSSSSQPTDHG
AALLPQENKSLLNHGHGQWQDRVKNETANQESQQQEQTHLLRNDQPSRPEIVSQGSDNKD
LTSNTPKECELLKVKQELGNTSQQGIVAQQQPMQQMKSEQTPIVAQQQPMPQMKSEQAPI
VALQQPLQQMKSQQTPHTNQTNGATTAAKAPVVTFHMLLPILRRYIDKDKDMQVQSIFAK
LRKNEVSKEHFLKVVRNIVGDKVLKLALSEYQMQHTAQAQRNTQTNPGNYSLLSQVSGQQ
TVPSGSMTDEQEAYPGAHTIPMKQAIDNLRPPQFRPSLSSQVQSIRGYSPSQSNAHKANE
TGNMSDGKGAHMLQARPPNTLTPAQTMQHHVQRPQTPSPMFGTNSIHARPFPRPVGSPAA
SFRPQMTDPNQRAQLVQGAVTTVAGSVPTQSIVSGNAPTNQSTWQKSANKEQKTNSFTPT
AHMNKETISQNSESSQNSFVAMHAKQVNQAPGSSKGGGGMENQSPKLSASKSSTTTNSSQ
TQSHVTQAEPKLQVQSSVQAPPAAASKTPQRKASSGQKKPLEALGSSPPPSSKKQKTSGG
FHEQSIDQLNDVTAVSGVNLREEEEQLFSAPKEESRVSEAARRVVQLEEEKLILQKGPLA
RKLAEIMRKCNLKVIGTDVERCLSMCVEERLRGFISDIIRFSKQRVDVEKSRHRFYPLSS
DVRSHIMRVNREAKEQWEKKQAEDAERIRKQNDYMQGDGNANIDLEKDKNETRASSKHAK
TYKEDDDKMRTTAANVAARVAAGGDDMLSKWQLLAERNKQRSEGGDGSSGSVPGNMLQHK
PSLKSGKDSMEDQGIEKRGYSTMLGSGGIRRSPLTKVARSVSVKDVIAALEREPQMSKSS
LLFQLYGRPLTEPAAK
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggatcccatcatgaagctcctcgaggacgacgaggacgagagcctgcactcgggcgcc
gacgtcgaggccttcacggcggcgctcaaccgcgaggtggaggccagtgccagcaccagc
agcaccatcagtgccccgcccgccgcctcctcctcctcgtcccagcctacggatcacggc
gccgcacttctacctcaggaaaacaagtcattgttaaaccatggtcatggacagtggcaa
gatcgagtaaagaatgaaactgcaaaccaggagagtcaacaacaggaacagacacatcta
cttagaaatgatcagccatcaagacctgaaattgtttctcaaggttctgataacaaagac
cttacttctaatacaccaaaagagtgcgagttactgaaagtaaagcaagagcttggaaac
acgtctcaacaaggtattgttgctcagcagcagcctatgcagcaaatgaagagtgaacaa
acaccaattgttgctcagcagcagcctatgccacaaatgaagagtgaacaagcaccaatt
gtcgctctgcagcagcctttgcagcaaatgaagagtcaacaaacacctcacacaaatcaa
acgaatggtgcaactacagcagcaaaagccccagttgttacatttcacatgttacttccg
attttgagacgctacattgacaaagacaaggatatgcaagttcagtccatttttgccaag
ttgcggaaaaatgaagtcagcaaggaacactttttaaaagttgtaaggaatattgttggc
gataaggtgcttaagctagctctttcggaatatcaaatgcagcacactgctcaggcacag
cgaaatactcagacaaatccaggcaactattctttattaagtcaagtttctggtcagcag
actgttcctagtggttctatgacagatgagcaggaggcatatccaggggctcacaccatc
cctatgaaacaagctattgacaacctaagaccacctcaattccggccttccttgtctagc
caagtgcagagtattaggggttattcaccttcacaaagcaatgcacataaggctaatgaa
acaggaaacatgtcagatgggaaaggagctcatatgctacaagcccgtccacccaatacc
ttaactccggcgcaaacaatgcagcatcatgttcagcgtccacaaacaccctcgccaatg
tttgggacaaatagtattcatgcacgtccatttccaagaccagttggaagtccagctgca
tcatttagaccacaaatgacagatccgaatcaaagagcacaattggtccagggagctgtg
accacagtagctgggagtgtgccaacacaatctatagtgtctggaaatgcaccaactaat
caatctacatggcaaaaatcagcaaacaaggagcagaaaactaattctttcactccaaca
gcacatatgaataaggaaactattagccaaaactcggaatcttcgcagaattcttttgtt
gcaatgcatgcaaaacaagtcaatcaagccccaggatcttcaaaaggtggtggtggcatg
gaaaaccagtcaccaaaattgagtgcttctaagtcttcgaccacaacaaactcaagtcag
actcaatctcatgtcactcaagcagagcctaaattgcaggtccaatcttctgtgcaagca
cctcctgcggcagcttctaaaacacctcagaggaaggcatcttctggacagaagaagcct
ctggaagcattaggctcatcccctccaccatctagcaaaaagcagaagacatctggaggt
ttccatgaacaaagcattgaccagcttaatgatgtcacagcagttagtggtgttaatctg
agggaagaagaggaacaacttttctctgctccaaaggaagagagtcgagtttcagaagct
gctcggagagttgttcaactagaagaagaaaagctcattctacagaagggaccactggca
aggaaattagcagaaatcatgaggaaatgtaatttgaaggtcattggcactgatgtggaa
cgttgtctatcgatgtgcgttgaggagaggttacgaggatttataagcgatataataagg
ttctctaaacagagggttgatgttgaaaagtcaaggcatcgtttttatccgttatcctca
gatgttcgcagtcatattatgagggtgaaccgagaagctaaagaacaatgggagaaaaag
caagctgaagatgctgagagaataaggaaacaaaatgattacatgcagggagatggcaat
gcaaatattgatctagaaaaagacaagaacgagacccgtgcctcgtcaaagcatgcaaag
acttacaaggaggacgatgataagatgagaactacagctgcaaatgttgctgcgcgagtt
gcagctggtggagatgacatgctgtcaaagtggcaattgctagctgaacgaaataaacag
agaagtgagggaggtgacggttcttctggctctgtaccaggtaacatgttgcaacacaag
ccatcactaaaatctgggaaagactcgatggaagatcagggaattgaaaagagaggctac
tccacaatgcttggatctggtggtattagaaggtcaccactaacaaaagtggcacggagt
gtttcagtaaaagatgtgatagcagcactggagcgagagcctcagatgtcaaaatcctct
ttacttttccagctatacgggaggccattgacagaacctgctgcaaagtaa
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