Setaria viridis (green foxtail): 117837515
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Entry
117837515 CDS
T07951
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117837515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117837515
03019 Messenger RNA biogenesis [BR:
svs03019
]
117837515
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117837515
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117837515
U7-dependent histone pre-mRNA processing factors
117837515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
HAMP_2
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
117837515
NCBI-ProteinID:
XP_034573065
LinkDB
All DBs
Position
9:378749..381926
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AA seq
695 aa
AA seq
DB search
MASVAAPSASQAGKRPATGGREGDQMVVTPLGAGSEVGRSCVHLTFKGRTVLFDCGIHPA
YSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLL
LMDYVKVSKVSVEDMLYNESDIGRSMEKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFM
VDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTYGIQQHQPRIVREKRFTEVI
HNTVSQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMSVYQTYI
NSMNDRIRNQFAQSNPFIFKHIESLNSIENFHDVGPSVVMASPGGLQSGLSRQLFDKWCT
DKKNACVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQTSNFL
DELRPPNIILVHGEANEMSRLKQKLISQFDGTNTKIVSPKNCQSVEMYFTCEKMAKTIGR
LAENVPGGGESSGGLLVKKGFTYQIMAPEDLRVFTQLSTANITQRIAVPYSGSFEVIKYR
LNQIYESVESATEESDVPALIVHERVTVRLDSESYVTLQWSSDPISDMVSDSVVSMILNI
GREGPKVVPVEEAAKTKEDTERVALKVVYSLMASLFGDVKVGDEGKFVISVDGDVAHLDG
RSGDVECVNGTLKERIKTAFRRIQGAVRPIPLSAS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgtcgccgcgccgagcgcctcgcaggcggggaagcgcccggccaccggcggg
cgggagggcgaccagatggtcgtcacgccgctgggcgccggcagcgaggtcggccgctcc
tgcgtccacttgacattcaagggccgcaccgtcctcttcgactgcggcatccacccggcc
tactccggcatggcagcgctgccctacttcgacgagatcgatccgtccactatagacgtc
ctcctcatcacccactttcacttggatcacgcagcctcgctgccgtacttcctggagaag
actaccttcaagggcagggtgtttatgacccatgccacgaaggctatttacaagctgctg
cttatggattatgtcaaagtcagcaaagtttccgtggaggatatgctgtataatgagagt
gacattggtcgctctatggagaaaattgaggttatcgatttccaccagacattggaagtt
aatggcatacgcttctggtgctacactgctggccatgtacttggtgccgccatgttcatg
gtggatattgctggtgtgcgcattctttacacaggtgactactcccgtgaagaagaccgg
cacctacgagctgctgagctcccgcagttctccccagatatttgcattattgagtcgact
tatggcatacaacaacatcagcccaggattgtacgtgagaagcgctttactgaggtcatc
cacaatactgtttcacaggggggccgtgttcttatcccagcatttgctcttggcagagca
caagaactgttacttatccttgatgagtattggtccaagcacccagagctccataagatt
ccaatctactatgcctccccgcttgcgaagaggtgcatgtctgtctaccagacatacata
aactccatgaatgacaggattcggaaccaatttgcgcagtccaatcccttcattttcaag
catatcgagtccttgaatagcattgagaactttcatgatgtaggtccttcagtggtgatg
gctagtccaggtggtcttcagagtggtctctctaggcagctttttgataagtggtgcacg
gataagaagaatgcttgtgttattccaggctatgttgtggaggggacccttgcaaagacc
ataatcaacgagccaagagaagtgacgctagctaatgggctcactgctcctcttcatatg
caggtccactatatctctttctcagctcatgccgatttccctcagacaagcaactttttg
gatgaacttcggccacccaacattattcttgtacatggagaagcaaatgaaatgtcaagg
ctcaaacagaaacttatttctcagtttgatggaacaaacacgaaaattgtctcccccaag
aattgccaatcagtggagatgtatttcacttgcgagaaaatggccaagactattggcagg
ctggcagaaaacgtaccgggaggtggagagtcttcgggtggcttgcttgtgaaaaaagga
ttcacatatcagattatggctcctgaagatctccgagtgttcacacagttatctacagct
aacatcactcagcgcattgcagttccttattctggttcttttgaagtcataaagtacaga
ctgaatcaaatatatgagagcgtggagtcagcaactgaggaatctgatgttccagcactt
attgtgcatgagcgagtgacagttcgcctagactcagaaagctatgttacgctgcaatgg
tcatctgatcccatcagcgacatggtctctgattctgtggtgtctatgatcttgaacata
ggccgtgaaggcccaaaagtagttccagttgaagaagcagcgaagaccaaggaagatacg
gaaagggtagcactaaaggtagtgtattctcttatggcgtcgctttttggtgacgttaaa
gttggagatgaagggaaatttgtcatatctgtcgatggagatgtggcacacttggatggg
aggagtggtgacgttgaatgtgtaaatggtacactgaaagaacggatcaagactgctttc
cgtcgcatacagggtgctgtgagaccaatcccactttcagcctcttga
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