Setaria viridis (green foxtail): 117837600
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Entry
117837600 CDS
T07951
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03440
Homologous recombination
svs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117837600
03460 Fanconi anemia pathway
117837600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svs03032
]
117837600
03400 DNA repair and recombination proteins [BR:
svs03400
]
117837600
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
117837600
DNA replication proteins [BR:
svs03032
]
Eukaryotic type
DNA Topoisomerases
117837600
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
117837600
FA (Fanconi anemia) pathway
117837600
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Zn_ribbon_GRF_2
Motif
Other DBs
NCBI-GeneID:
117837600
NCBI-ProteinID:
XP_034573204
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Position
9:53074629..53083629
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AA seq
917 aa
AA seq
DB search
MQPGGGGGAIRVLNVAEKPSVAKAVAEILSRGSMQSRAGRSPYNRVFEFNYAINGRACRM
LVTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQAIKQTLEEEARRCQWLV
LWLDCDREGENIAYEVIEVCTGANSHLNIWRARFSALIDREIHESVQHLGRPNKLFADAV
DARQEIDLRIGASFTRFQTMLLKDAFVIDVTGDDRNLVLSYGPCQFPTLGFIVERFWEIQ
AHEPEEFWTINCTHTSDEGTASFGWIRGHLFDYPSAVILYEMCVEEPMATVQNVRNQEKL
KYPPYPLSTLELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHAIV
REQVEHPVWGAYAHRLLTPEERLWRNPSNGGHDDKAHPPIHPTKFSRGENNWSPDHNRLY
ELVVRHFLACCSQPAVGAETTVEIDIAGEQFNASGRVVLAKNYLDVYRFDSWGGTLLPTY
NIGQQFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLLDRCYATKD
ENTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKSQVLESCLQQMK
ACFLDARVNKAKLLDAMGTFFARSNRPVNETQNPIEVVRLCAACRESEMVLKQKQNGEFM
VGCRSYPQCRNVVWLPGSLSEASVTNQVCPICTPGPVYKIQFKFRRRDIPPNFDVDHLGC
IGGCDDILKELTEISRFGSRSQAATPARGQTPNGVRQGPPRQDLHTNFRPAGQLNNENPS
VMHSQGFRSTHTQNQSNTSDAGQVLCTSCGELCISRIANTEANRGRKFYKCEDPGCGFFK
WEDELDNATPRGRRGRGSSRQAPASAGRRGGAQARGRRGRGRNTDGGMFVSATGDPSRCC
FTCGDPSHFANACPNRR
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgcagcccggcggcggcggcggcgcgatccgcgtgctgaacgtggcggagaagccgtcg
gtggcgaaggccgtggcggagatcctgtcgcgcggctcgatgcagtcgcgggcggggcgg
tccccgtacaaccgcgtcttcgagttcaactacgccatcaacggccgcgcctgccgcatg
ctcgtcacctccgtcacgggccacctcatggagctcgaattcgacgaccggttccgccgc
tggcactcctgcgaccccgccgatctcttccacgccccagtccgcaagtccgtgccccag
gacaagcaggccataaaacaaactttggaagaagaagctaggaggtgccagtggctggtg
ctatggcttgattgtgacagagagggtgagaacatagcatatgaagtgatcgaggtttgt
acaggtgccaacagtcatcttaacatttggagggctcgtttctcagctttgattgacagg
gaaatacatgaatctgtgcaacatctcggcagacccaacaaactatttgcggatgctgtg
gatgcaagacaggaaattgaccttcgcattggtgcctccttcacaaggtttcaaacaatg
ctgttaaaagatgcatttgtaattgatgtcactggggatgacaggaatttagttctgagc
tatggtccttgtcagtttccgacgctcggattcattgttgagcgtttctgggagattcaa
gctcatgaacctgaagagttctggacgataaattgtactcatacttctgatgaaggcact
gcatcttttggttggatacgtggtcatttgtttgattacccatctgctgttatactctat
gaaatgtgtgtggaagaaccaatggcaacagttcaaaatgttagaaatcaagaaaaatta
aaataccccccatatccactaagtacattggagcttcaaaaacgtgcttctaggtacttc
agaatgagttcagaacacacaatgaaggtggctgaagaactttatcaagctggattcatt
agttatccaaggacagaaactgataacttctctccaaacactgacctgcatgcaattgta
cgtgaacaagtggagcatccagtatggggagcatatgctcatcgacttctaactcctgaa
gaaagactttggagaaatcccagtaatggtggtcatgatgacaaggcacatcctcctatt
catccaaccaaattttcaagaggcgaaaataactggagccctgaccacaatagattatat
gagcttgttgttcgccatttccttgcatgttgctctcaaccagctgttggagctgaaaca
actgtggaaattgacatagctggtgaacagtttaatgcatcagggcgtgttgtacttgct
aaaaattatttggatgtttatcgctttgactcatggggtggcacattacttccaacgtac
aacattggacagcagtttgttccgacaactttaacacttgattctggagtgactcggcca
ccccctcttcttgctgaagctgaccttcttagctgtatggataaagcaggaattggcact
gatgcaaccatgcatgatcacataaagaagttgcttgaccgttgttatgcaaccaaagat
gaaaacacacgtttctccccgacaaatcttggtgaggcattggtaatgggttatgatgaa
atggggtatgagctttggaagccttatttaagatcaatgatggaagctgatatgaaatca
gtaagcataggtacaaagagcaaatcacaagtacttgagagttgtttgcaacagatgaag
gcttgctttcttgatgcaagggtgaacaaagcgaagctccttgatgcaatggggacattc
tttgcaagatctaataggcctgtaaatgagacacaaaacccgatagaggttgtgaggctg
tgtgctgcatgccgcgaatctgaaatggtgctgaagcaaaagcagaatggtgaatttatg
gttggttgccgaagttatccacaatgtagaaatgtggtatggctcccaggatctctttca
gaagcgtctgtaactaatcaagtttgtcctatctgcacaccaggccctgtttataagatt
caatttaaattccgtcggagggatattccaccaaatttcgatgttgatcacctaggttgt
attggtggatgcgatgatatactcaaagagcttacggaaataagtaggttcggaagtcgt
agccaggctgcaacaccagcaagaggacagactccgaatggtgtgaggcaggggcctcca
aggcaggatttacatactaattttcgtccagcaggccagcttaataatgagaacccatcg
gttatgcattctcaaggtttccgttcaacccatacccaaaaccaaagtaacacatcagat
gcaggccaagtgctgtgcacttcatgtggagaactctgcatatcacgaattgctaataca
gaggctaacaggggaaggaagttctataaatgtgaagaccctggctgtggcttctttaaa
tgggaagacgaactggataacgctacgccgagaggccggcgcgggcgcggtagcagcagg
caggcgccagcatctgcaggacggagaggcggcgcccaagcgcgcggccggaggggcaga
ggccgtaacactgatggcgggatgttcgtttcagcgacgggcgacccttcccgctgctgc
ttcacctgcggcgatccttcccacttcgccaacgcctgcccgaaccggagatag
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