Setaria viridis (green foxtail): 117837721
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Entry
117837721 CDS
T07951
Name
(RefSeq) ubiquitin domain-containing protein DSK2b
KO
K04523
ubiquilin
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117837721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
svs04131
]
117837721
03051 Proteasome [BR:
svs03051
]
117837721
Membrane trafficking [BR:
svs04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
117837721
Proteasome [BR:
svs03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
117837721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
UBA
Rad60-SLD
STI1-HOP_DP
TSP9
UBA_7
Rad60-SLD_2
Dsc3_N
TSC22
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
117837721
NCBI-ProteinID:
XP_034573355
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Position
9:38337517..38342240
Genome browser
AA seq
575 aa
AA seq
DB search
MASGGEGAGSGESPPAAAGEAASAGATLNIRCANGSKFTVRADLAATVGAFKEVVAGSCD
VPAPQQRLIYKGRILKDEQTLESYGVETDHTIHLVRGVAPSAASGAPAAAAAAAAASPLA
SSTPSSGPAGGLGGLFPGVGAPRSGRPSGIFGPGFPELEQVEQHLSQNPNLMREIMNMPA
MQNLMNNPDLIRNMIMNNPQLREIMDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRN
TDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTASNPFAALLGNQGSNQPGQ
PATNAPTPGSESTTGTPAPNTNPLPNPWSSNAGSAQGAARSGPTGNARTGATGGLGGLGS
PDLSSLLSGLAGNPRSGAAGGLGGLGSPDLGSMLGGVPDASFLNQMLQNPAMMQMMQSLM
SDPQTMNQLLNFNPNARNLMESNTQLREMFQNPEFLRQLTSPETLQQLLSFQQTLLGQLG
QNQSSQDGNNSGSATGTRGNPSLDTLMSMLSGLGSGGSLGVPNNSNVPPEELYATQLTQL
REMGFIDNAENIQALVATAGNVHAAVERLLGNLGQ
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcggaggcgaaggcgccgggagcggcgagtccccgcctgctgccgcgggggag
gcggcatcggcgggggcgacgctgaacatccggtgcgccaacggctccaagttcacggtg
cgggccgacctggccgccacggtgggcgcgttcaaggaggtcgtggccgggagctgcgac
gtgccggcgccgcagcagcgcctgatctacaagggccgcatcctcaaggacgagcaaacc
ctagaaagctacggtgttgagacagatcacacaattcacttggtgcgtggtgtcgcccca
tcggctgcatcaggtgcacctgctgctgctgctgctgctgctgctgccagtccccttgct
tcatctactcctagcagtggtccagcaggtggcctgggaggcctatttccgggcgttggt
gctccaagaagtggcaggccatcaggtatatttgggccaggatttccagaactagagcaa
gttgagcagcatttaagccagaatcccaacttgatgagggagataatgaacatgccagca
atgcaaaatctcatgaacaacccagatttaatacgtaatatgatcatgaacaacccgcaa
ttgcgcgagatcatggatcggaatccagatcttgcccatgtgctcaatgacccaagtgtt
ctccgacaaactctcgaagctgctaggaaccctgaaatcatgagagagatgatgcggaac
acagacagagctatgagcaacattgaatcttctcctgaagggtttaatatgctccgacgg
atgtatgaaactgtgcaggagcctttcctgaatgcaaccacaatgggcggagaaggcaac
acagcctcaaacccatttgcagctcttcttggcaatcaggggtctaaccaacctggtcaa
cctgcaacaaatgctccaactcccggttctgagtccacaacaggaacccctgctccaaat
accaatccacttccaaatccctggagcagcaatgctgggagtgcacaaggagcagcacgg
tccggtcctactgggaatgcaagaactggtgccactggtggcctgggagggttgggttca
ccagatttgagtagcttgctcagtggtcttgctggcaatccaagatctggtgccgctggt
ggcctaggagggttgggatcaccagacctggggagtatgcttggcggtgtacctgatgct
tcttttctgaatcagatgttgcaaaaccccgcaatgatgcagatgatgcagagccttatg
tctgacccacagaccatgaaccagttgcttaacttcaacccgaatgcacgaaacctgatg
gaatcaaacactcagctgagggaaatgtttcaaaatccggaatttcttcgccagttgaca
tctccagagactttgcagcaattactctcatttcagcagactttattaggacagcttggt
caaaatcaatctagccaggatggcaacaattcaggcagtgcgacaggtacgcgaggaaac
cctagccttgacaccttgatgagcatgctcagcgggcttggatcaggtggcagcctaggt
gttccaaataattccaatgtgccaccagaggagctttatgcaacacagcttactcagctc
cgagaaatgggtttcattgacaatgcggagaacatccaagcactggttgctactgcaggg
aatgtacatgctgcggtggagcgcctccttgggaatcttggccagtag
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