Setaria viridis (green foxtail): 117837731
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Entry
117837731 CDS
T07951
Name
(RefSeq) pre-mRNA-processing factor 39-1
KO
K13217
pre-mRNA-processing factor 39
Organism
svs
Setaria viridis (green foxtail)
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
svs03041
]
117837731
Spliceosome [BR:
svs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
117837731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
Motif
Other DBs
NCBI-GeneID:
117837731
NCBI-ProteinID:
XP_034573369
LinkDB
All DBs
Position
9:50926447..50934563
Genome browser
AA seq
771 aa
AA seq
DB search
MEQHQTVAAGVDSGSAEPGAAAFDLTTANPEANAYGHNPPAVTGGSAVTPDGGAQAADGS
AYPAEHAALNGTAGEMANYQSTENGAAVTNEMGEPVPEPSYEEAAVSAEEARLWSVVTAN
SLDFNAWTTLIDETEKNAESNILKIRKVYDAFLAEFPLCFGYWKKYADHEGRLDGANKVI
EVYERAVLAVTYSVDIWYNYCQFAISTYDDPEIIRRLFERGLAYVGTDYRSNILWDEYVK
YEESLQAWSHLAVIYTRILEHPIQQLDRYFNCLKELASTRDLSEILTAEEASVYGVASEN
SAQVLDGETHPDDPDKSSKPEAENLAKYVSMREEMYKKAKEYESKIIGFELAIRRPYFHV
KPLDNPELENWHNYLDFIEKEEDINKVIKLYERCVIACASYSEFWIRYVQCMEDKGSLEL
ANNALARATHVFVKKQPEMHLFSARFKELNGDVSGARAEYEHLYSVLCPGFLEAIVKHSN
MEHRLGDDASACSVYDKAISTEKEKEQSQLLPTLLIQYSRFLFLAIQDLERARDTLTELH
EQLNITKPVLEAVIHLESIFPCVKRIEFLDSLVERFITHESSQGEGSSLGDKEEISSIFL
EFLDLFGDAKSIKKALTRHTALFSCKRSILPSKKRKADDAIMSDRDKLAKIGGTQPVMGT
DPNAPNPPVWPATSEASGQQWGAGYAPQAAYPAYGTYDYSHQMPQPAAQAAYGAYPQAYP
AQGYTQQSYAQPAAMAAAPVPAAAPAPAPTAAYPQQPAAAAPQPYYGTTYY
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggagcaacaccagaccgttgctgccggtgtcgattccggtagcgcggagcctggtgcc
gcagctttcgatttgacgaccgccaatcctgaggcgaacgcgtacggtcataatccaccg
gctgtcaccggtgggagcgccgtgacccctgacggtggagcccaggcagctgatggctct
gcctacccggccgagcacgcggcgttgaatgggacggctggcgagatggctaattaccaa
tctacagagaacggcgccgcagtcaccaacgagatgggcgagccggttccagagccatcc
tacgaagaagctgcggtttcagcagaagaggctaggttgtggagtgttgttactgcaaat
tccttagatttcaatgcttggaccacacttattgatgaaacagagaagaatgctgagagc
aatattttgaagatacggaaagtgtatgatgcatttcttgcggagttccctctttgcttt
ggttattggaagaaatatgcagatcatgaaggtagacttgatggtgccaacaaagttata
gaggtgtatgaacgagcggttcttgcagttacttattcagtggacatttggtataactac
tgtcagttcgcaatttcaacatatgatgacccagagatcatcagaagactgtttgaaaga
ggtttggcgtacgttggaacagattatcgatccaatattttgtgggatgagtatgttaag
tatgaagaatcactgcaggcatggagtcatctagctgtgatatatacaagaatattagag
catcccatacagcagcttgatcggtactttaattgcctcaaggaattggcttcaacacgg
gatctttcggagatactgactgcggaggaagcttctgtgtatggtgttgcttctgagaat
agtgctcaggttcttgatggtgagacacatcctgatgatcctgataaatccagcaaacct
gaagcagagaaccttgcaaagtatgtctccatgagagaagagatgtacaagaaggccaaa
gagtatgaatctaagattattggttttgagctagctattagaagaccatattttcacgtc
aagcctcttgacaatccagagcttgaaaattggcataactaccttgattttatcgagaag
gaagaagacatcaataaggttatcaaattgtacgaaagatgtgttattgcatgtgctagt
tattcagaattctggatccgctatgtgcaatgtatggaggataaaggtagtctagaacta
gcaaacaatgccctggctcgtgccactcatgtgtttgtcaagaagcagccagagatgcat
ctgtttagtgcacgctttaaggagcttaatggagatgtttctggagcacgtgcagaatat
gagcatctttactcagtactatgtcctggctttctagaggccattgtgaagcattccaat
atggagcaccgactgggtgatgatgcatcagcttgttcagtttatgacaaggccatttca
actgaaaaggaaaaggaacagagccagctcttgccaacgttgcttattcagtactcacgc
ttcttatttttggccatccaagatttggaaagggcaagggataccttaactgaattgcat
gagcaattgaacataacaaaaccagttcttgaggctgtcattcatctagagtctatcttt
ccatgtgtaaagcgtattgaatttttagattcacttgtggagaggtttattacacatgaa
tcatctcaaggagaggggtcaagtctaggcgacaaagaagaaatatcttccatatttttg
gagtttttggatctctttggggatgcaaagtcaatcaagaaggctttaactcggcacacg
gctctcttttcatgtaagagaagcattctaccatcaaagaaacggaaagcagatgatgct
attatgtcagacagggacaagttggctaaaattggtggtactcagccagttatggggact
gatccaaatgctcccaatcctccagtttggcccgcgacttctgaagcatcagggcaacaa
tggggagctggttatgcacctcaggctgcataccctgcatatggaacttatgactacagc
catcaaatgcctcagcctgctgctcaagctgcttatggtgcttaccctcaagcataccct
gctcagggctacacacaacaaagctacgcacaacctgcagcaatggcagcagcaccagtg
cccgcagcggcaccagcaccggcaccaacagcagcctaccctcagcaacctgcggcagca
gctcctcaaccctactatggcacaacctactactga
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