Setaria viridis (green foxtail): 117837811
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Entry
117837811 CDS
T07951
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03020
RNA polymerase
svs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117837811
09124 Replication and repair
03420 Nucleotide excision repair
117837811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117837811
03400 DNA repair and recombination proteins [BR:
svs03400
]
117837811
Enzymes [BR:
svs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117837811
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117837811
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117837811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
117837811
NCBI-ProteinID:
XP_034573477
LinkDB
All DBs
Position
9:complement(10021608..10029464)
Genome browser
AA seq
1228 aa
AA seq
DB search
MEDDEYEEGMEMGYGGHHQHRGGHAGYAEEEEEVGYGGGDGDEMEEDGDGDAEQRDEEEI
TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEF
AETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDC
EEVTETSDYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKVLI
AQEKMSTNHVYVFKKRQPNKFSYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYI
RATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQV
ALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCA
LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIK
AKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK
PRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEIS
PAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDY
GRCSRPLFIVENQRLLIKKAHIRALQQRETPDEGWHELVSKGYIEYIDTEEEETTMISMT
INDLINARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
IYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSV
IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLA
PPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADGL
RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRM
TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKL
TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH
GAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL
LFQELMAMAIAPRMLTHDMKTGKDQKKR
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacgagtacgaggaggggatggagatgggctacggcgggcaccaccagcac
cgcggcggccacgcggggtacgcggaggaggaggaggaggtggggtacggcggcggggac
ggggacgagatggaagaggacggggacggggacgccgagcagcgggacgaggaggagatc
acccaggaggacgcctgggccgtcatctccgcctacttcgaggagaagggcctcgtgcgc
cagcagctcgactcattcgacgagttcatccagaacaccatgcaggagatcgtcgacgag
tccgccgacatcgagatccgccccgagtcgcagcacaaccccggccgccaggccgagttc
gccgagactctgcacaagatcagctttggtcaaatctatctcagcaagccaatgatgaca
gaagctgatggagagacagctactttatttccaaaatcggcaaggctcaggaacttgaca
tactcggcaccactgtacgttgatgtatcatacagagtaatgaagaaaggacatgactgt
gaggaagttacagaaacttcagattacccgaaagtgttcattgggaaggttccaatcatg
ttgcgttctagttactgcacactatatcaacaatctgagaaggaccttaccgaactcggg
gagtgcccttatgaccaaggcggttatttcattatcaatggaagcgaaaaggttcttatt
gcccaggagaagatgagcaccaaccatgtttatgtctttaagaagaggcaaccaaacaaa
ttttcatatgtggctgaagtccgttccatggctgagaaccagaacagaccagccagcagc
atgtttgtaaggatgctttcgcgagcaggagcaaaagggggttcatctggtcaatatatc
cgtgctactctgccctatattcgtgcggacattcccattatcattgtttttcgagcatta
ggatttgttgctgacaaagatatactggagcacatatgttatgacttttctgatacacaa
atgatggaattactacgcccatccctggaggaagcttttgttattcaaaatcaacaggtt
gctctggactatattggaaagcgtggagctacagttggtgtcactcgagaaaagagaatt
aagtatgcaaaagaaatacttcaaaaggaaatgttgcctcatgttggtgtgggggaattt
tgtgaaactaagaaggcatactattttggatacattattcaccgcctactgatgtgtgct
cttggtcgaagagctgaggacgaccgagatcattatggcaacaaaagactagatcttgct
ggtccattgcttggagggctgtttagaatgctcttcaggaagttaacaagggatgtgaga
tcttatgtgcaaaagtgtgtagataatggaaaggaagttaatttgcaatttgctatcaaa
gcaaaaactattaccagcggcttgaagtattcccttgctactgggaactgggggcaggct
aaccaagctggaaccagagcgggggtttctcaggtgctcaatcgcctgacttatgcttct
acgctgtcacatctccggaggctgaactctcccattgggcgtgaagggaaattggcaaag
ccccgccagttgcataactctcattggggaatgatgtgtcctgctgaaacaccagaagga
caagcttgcggcttggtgaaaaatcttgccttgatggtatacatcactgttggttctgct
gcaaatccaattttggaatttttggaggagtggggcacagaaaattttgaggagatatca
ccagccgtcattccacaagctgctaaaatttttgtcaatggttgttgggttggaattcat
aggaaccctgacctgctggtgaagactcttaggcgtttaagaagacagattgatgtcaac
actgaagttggtgtggttcgtgatatccgtcttaaagaacttcgactctacacggattat
gggcgttgcagtcgtccattgtttattgttgagaaccagaggctgctcatcaagaaggcg
catatccgagcattgcaacaaagggagactcctgatgaaggttggcatgagttggtctca
aaaggatatatagagtacatagataccgaagaagaggagactaccatgatctccatgact
ataaatgaccttataaatgcaagacacaacccagaggaggcgtattctgagacctacacg
cattgtgagatccatccttctttgattcttggtgtttgtgcatcaattattccttttcct
gatcacaaccagtcacctcgtaatacatatcagtctgctatgggaaagcaagccatggga
atttatgtcaccaactaccagttaagaatggacacattggcctacgttctctactaccca
caaaagcctctagttactacacgtgctatggaacatttgcacttcagacagttaccagct
ggcattaacgcaatcgtcgctatctcttgctactctggttataaccaagaagattcagtt
atcatgaatcaatcttccatagatcgtgggttcttccgatcactatttttccgctcttac
agagatgaggagaagaagatggggacacttgtcaaagaggaatttggtcgcccaaatagg
gagaatactatgggaatgcgccatgggtcatacgataaactagatgatgatggccttgca
ccacctggaacaagggtctcgggtgaagatgtcattattgggaagacatctcctattcca
caagatgacgctcaagggcaagcttctagatattctaagcgcgatcatagtacttctctg
cggcacagtgaaagtggtatggtagatcaggttctgttaacaacaaatgctgatggtcta
agatttgtcaaggttagaatgcgatcagttcgcattccacaaattggagacaagtttagc
agtaggcatggacaaaaaggaactgttgggatgacttacacacaagaggacatgccatgg
acgattgaaggcatcacacctgatattattgtgaatccacatgctattccatcccgtatg
actattggacagctgattgagtgtattatgggtaaagttgcagctcacatggggaaggaa
ggagatgcgactccattcactgatgttactgtggataacatcagcaaagctcttcataaa
tgtggttatcaaatgcgtggatttgagaccatgtacaatggtcacactggaaggaaactg
acagctatgatttttctgggtcccacatattaccaaagactcaagcacatggtggacgac
aagatacattctagaggtcgtggtcctgttcagatactcacccgacagccagcagagggg
cgttcgcgtgacggtggtctccgctttggagaaatggaaagggattgtatgatcgcccat
ggagcagctttcttcctgaaggaaaggctgtttgaccagagtgatgcatacagagtccat
gtatgcgagaaatgtggtctcatcgcaatcgccaacctaaagaaaaactcatttgagtgt
aggggctgcaagaacaaaactgacattgtccaagtacacataccctatgcttgtaagctt
ctgttccaggagctcatggcgatggccattgctcctagaatgctcacccatgatatgaag
acagggaaggatcagaaaaaacgctga
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integrated database retrieval system
