Setaria viridis (green foxtail): 117838030
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Entry
117838030 CDS
T07951
Name
(RefSeq) cyclin-H1-1 isoform X1
KO
K06634
cyclin H
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03022
Basal transcription factors
svs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117838030
09124 Replication and repair
03420 Nucleotide excision repair
117838030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117838030
03400 DNA repair and recombination proteins [BR:
svs03400
]
117838030
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117838030
DNA repair and recombination proteins [BR:
svs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117838030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cyclin_C_2
Cyclin_N
TFIIB
Exo70_N
RB_B
Motif
Other DBs
NCBI-GeneID:
117838030
NCBI-ProteinID:
XP_072147036
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Position
9:complement(6030165..6035224)
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AA seq
337 aa
AA seq
DB search
MSDFRTSTQRERWIFQPHDLMERWAAANQRAAETLAQYGTTRMKVDQLDGSVDSPDRGMA
TLVDCKPTLEGSSDVKPLSYEEEQLTRVFYEQKIQEVCVAFKFPHKIQATAIIYFKRFYL
QWSVMEHHPKHIMLTCVYASCKVEENHVSAEELGKGIQQDHQIILNNEMVLLKTLDFDLI
VYAPYRSIEGFIDDLEGFCRVGNGAVQRLKELHQTAMSHADKMMLTDAPLLYTPGQLALA
ALHKSNDILRVFDFERYLETIFSRQHSDCTVEQFVQSINAIHYLVDQLKIPTVKDMRYVD
RKLKHCWDRSSHDEHKKKEKKSKHKSKRTSTDAQLNG
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatttccggacctccacgcaacgagagaggtggatcttccagccgcacgatctg
atggagaggtgggcggcggctaaccagcgggccgcggagaccctcgcgcagtatgggacg
acgcggatgaaggtggaccagttggatgggtcggtcgattcgccggatcgtggtatggcg
actctggttgattgcaaacctactcttgagggtagctcagatgtaaagcctctgtcttac
gaagaggagcaattgacacgagtattttacgagcagaagattcaagaagtatgtgtagca
ttcaaattccctcacaaaatccaggctacagctataatatatttcaagagattctatcta
cagtggtctgttatggagcatcacccaaagcatattatgttaacatgtgtatacgcttct
tgcaaagtggaagaaaaccatgtttctgctgaggagcttggtaaaggaattcagcaggac
caccagatcattctaaataatgagatggtccttcttaagactttagattttgatctcatt
gtttatgcgccatatcgatctattgaaggatttattgatgacctggagggtttctgcagg
gtaggtaatggtgcagtacagcgtttgaaggagttgcatcaaaccgcgatgtcccatgct
gacaaaatgatgttgaccgatgctcctcttctctatactccagggcagttggcactggct
gctttgcacaagtccaatgatattctcagggtcttcgattttgaaagatacttggaaact
atcttctcaaggcaacattctgattgtacagtcgaacagtttgttcaatcaatcaatgca
atccattacttggttgaccagcttaaaatacctactgttaaggatatgaggtatgttgac
cgcaagctgaaacattgttgggatcgaagctcgcatgatgagcataagaagaaagagaag
aagtcaaaacacaaatcgaaaagaacatctactgatgcacagctcaacggctag
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