Setaria viridis (green foxtail): 117838116
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Entry
117838116 CDS
T07951
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117838116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svs03021
]
117838116
Enzymes [BR:
svs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117838116
Transcription machinery [BR:
svs03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
117838116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
117838116
NCBI-ProteinID:
XP_034573898
LinkDB
All DBs
Position
9:14636999..14651023
Genome browser
AA seq
1179 aa
AA seq
DB search
MDTAAKSASPAGADYAALKELFRPHVESFDSFLDVGLDEMLRGIRPMEIKDPNSSAILKI
TLEKGQVLPPMRDGRLGVPLYPQECRQARTTYHGEFKVDVCLQCNEDGAQIRHTFNFGHL
PIMLMSKLCHLRDADPHKLVFHGEEATEMGGYFICGGMERLIRILILQKRNYPMGLVRGS
FVKRGAGYTDKAVVIRCVHSDQSSVTIKLYYLQNGSARLGFWLGGREFLLPVGIVLKALI
DTSDREIFTSLTCCYSDKYGRGKGVVSTQLIGERAQIILDEVRDLSLLTHMQCLVHIGKY
FRSVMEGFEHYDYETVAKAVLKDYIFVHLENNHDKFNLLIFMLQKLYALVDQTASPDNAD
ALQFQEALLPGHLITIFLKDRLQDWLRKSKRLIIEEATKNKSFDLNNALEVRKFLTKHTT
FVGRAIESMIKIGKVNSQSGLDLPQRDGMTIHAERLNFHRYISHFRSVHRGSAFAKMRTT
SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSVYNSEGVVKDFGKIKKSLSFEL
VRVGMNPVLPKIERTGPPEVLHVHLDGCILGTIASARIEEAVNYLRMLKLLAHSGIPEDL
EVGYVPLSLGGAYPGLYLFTNPARFVRPVKSLFGLPDGKQSIELIGPFEQAFMEIRCPDG
GDGGRKEKFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKF
RTDVKAFHLQTPQTPIVRTATYGKYCMDEFPSGTNAIVAVLAYTGYDMEDAMILNKSAVD
RGMFRGHIYQTECIDLSKKNRENVPEIFAKSVLSRDTSTAIDSDGLPRLGQTVHPNEQYY
SVYNRLTGAIRPVRLKGTEPAFIDYVAVNGASSKGDFQKANIRLRRVRNPIIGDKFSSRH
GQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLESMAAKAGSLHGKFMD
ATPFASSVKKEGKDPRKPDSIVDELGPMLASYGFNYHGTETLYSGFFGTEMDCAIFIGPV
YYQRLRHMVSDKFQVRTTGRIDQITRQPIGGRKHGGGIRFGEMERDALLAHGSSYLLHDR
LHSCSDYHIADVCSFCGSLLTATVIKSDTQKKAKREMLGLPTVRPQKNFACQACKTSKGM
ETVAMPYVFRYLAAELAAMNIKLELRLSNKSELPPSQGS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggacacggcggcgaagtcggcgtcgccggcgggagccgactacgcggcgctaaaggag
ctgttccggccgcacgtggaatcgttcgactccttcctcgacgtggggctggacgagatg
ctccgcggcatccgccccatggagatcaaggaccccaactccagcgccatcctaaaaata
accttggagaagggtcaagtgctaccgccaatgagggatggtcggttgggtgtacccctc
tacccccaggagtgcaggcaagcaagaactacatatcatggggaatttaaagtggatgtc
tgcctccagtgtaatgaagatggcgcacaaatcaggcataccttcaattttggccatctg
cctattatgttgatgtcaaaactgtgtcatctgagagatgctgatccgcacaaattagtt
ttccatggtgaagaggctaccgaaatgggcgggtacttcatatgcggcgggatggagaga
cttatacgtattcttatattacaaaagcgtaactatcctatggggttggtgcgtggttct
tttgttaaacgtggtgctggatacactgacaaagcagttgtcataagatgtgtccatagt
gaccagtccagtgtgacaataaagttgtattacctccaaaatggaagcgcaaggcttggg
ttttggttggggggtagagagtttctgcttcctgttggtattgtcctcaaggcccttatt
gatacaagtgaccgggaaatctttacaagcttgacatgctgctacagtgataaatatgga
agaggaaagggagttgttagtactcaactaattggtgaaagggcacaaataattcttgac
gaagtcagagacctgtcccttttgactcacatgcaatgcttggtgcatattggaaagtac
ttccgatctgtgatggaaggatttgaacattatgactatgaaacggttgctaaagcggtt
ctgaaggactatatctttgtgcacctggaaaacaaccacgataaatttaatctattgata
tttatgctgcagaaactttatgctctcgtagaccaaactgcttcgcctgacaatgctgac
gcactacaattccaggaggctctcttgcctgggcacttaatcacaatttttctgaaggat
agacttcaggattggctaagaaagtctaaacgtttaatcattgaagaggctacaaagaac
aaaagttttgatctcaacaatgcactggaggtaagaaaatttcttactaaacatacaaca
tttgttggtagagctattgagagtatgataaagatcgggaaagtgaattcacaatcagga
ttggatcttccacagagagatggaatgaccattcatgctgaacggctcaactttcatcgc
tatatctcacatttccgttctgttcataggggttctgcttttgctaaaatgcgcacaaca
tctgttagaaagttacttccagaatcctggggtttcctgtgtccagttcatacacctgat
ggagagccttgtggtttgttgaaccatatgacttccacatgccgtatttcatcggtctac
aactcagaaggtgtggttaaagattttgggaaaataaagaagtcactttcttttgagttg
gttcgtgttggaatgaaccctgtgttgccgaagattgagcgaactggtcccccagaagta
ctacatgtccatttggatggatgcattcttggtactattgcttctgctaggattgaggaa
gcagttaattatcttcggatgttgaaacttctggcacactcagggattcctgaagatctg
gaagttggttacgttcctcttagtcttggtggagcttatcctggcctttacctttttaca
aatccagctagatttgttcgacctgtcaaaagtctttttggtctacctgatggaaagcaa
agtattgagcttattggaccatttgaacaggcatttatggagatacggtgtcctgatggt
ggggatggtgggagaaaagaaaagtttcctgcaactcatgaagaaatccaccctactgct
attcttagtgtggttgccaatctgacaccttggtctgatcacaaccaaagtcctaggaac
atgtaccaatgccagatggcaaagcaaaccatgggtttttgtggacaagctctaaaattc
cgtactgatgtaaaagcattccacctacagacccctcagacaccaattgttcggacagct
acatatggcaaatattgtatggatgaatttccatcaggaacaaatgctattgttgcagtg
ctagcatacacaggttatgacatggaggatgctatgatattgaataaatcagctgttgat
cgtggaatgttccgtggacatatttaccagactgaatgcatcgacctatcaaaaaaaaac
agagaaaatgttccagaaatctttgcaaagagtgtattatctagggatacaagcactgct
attgattcagatggccttcctcggcttggacagacagtacatccaaatgagcagtactat
agtgtctataacagactcacaggcgcgataaggcctgtcagactaaaaggcacggagcca
gcgtttattgactatgttgctgtcaatggggcaagttcaaaaggtgactttcagaaggct
aacattcgtctgcgtcgtgtaagaaatcccataattggtgacaagttcagcagcagacat
gggcaaaagggtgtttgctctcagttgtggcctgacattgacatgccattctcggcaaat
actggcatgaggccagatctgatcattaaccctcatgcatttccttcaagaatgactata
gcaatgctcttagagtctatggcagcaaaggctggaagtttgcatggaaagttcatggat
gcaacgccttttgcaagctcagtcaaaaaggagggcaaggatccccgtaaacctgattcg
attgtggatgaactgggtcccatgctcgcatcttatgggtttaattatcatggaacagag
actctttatagtggattttttggcactgagatggattgtgcgattttcattggacctgtt
tactaccagcgtctaaggcatatggtctcagataaattccaggtccgcactactggtcgt
atagaccagataacaagacaaccaattggaggaaggaagcatggtggagggatccggttt
ggtgagatggagcgtgatgcactcctcgcccacgggtcttcctacctcttgcacgatagg
cttcactcctgctcggactaccacatcgcggacgtgtgctccttctgcgggagcttactg
accgctacggtgatcaagtccgatacccagaagaaagccaagcgtgagatgcttgggctg
cctacggtcagacctcagaagaacttcgcatgccaggcctgcaaaacgagcaaggggatg
gagaccgtggcgatgccatatgtgttcaggtacctggctgccgagctggctgccatgaac
ataaagctggagctccggctgagcaacaaatcagaattgcctccgagccaaggatcatga
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integrated database retrieval system
