Setaria viridis (green foxtail): 117838139
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Entry
117838139 CDS
T07951
Name
(RefSeq) protein OPAQUE1 isoform X1
KO
K10357
myosin V
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
117838139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117838139
04131 Membrane trafficking [BR:
svs04131
]
117838139
03029 Mitochondrial biogenesis [BR:
svs03029
]
117838139
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
svs04812
]
117838139
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
117838139
mRNA cycle factors
P-body specific factors
117838139
Membrane trafficking [BR:
svs04131
]
Others
Actin-binding proteins
Myosins
117838139
Mitochondrial biogenesis [BR:
svs03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
117838139
Cytoskeleton proteins [BR:
svs04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
117838139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
AAA_16
CCDC22_CC
Myosin_N
APG6_N
Zeta_toxin
TSC22
AAA_22
AAA_lid_6
Mis12
ABC_tran
Motif
Other DBs
NCBI-GeneID:
117838139
NCBI-ProteinID:
XP_034573936
LinkDB
All DBs
Position
9:21546507..21568165
Genome browser
AA seq
1508 aa
AA seq
DB search
MIFRPGTAVWVEHPDLAWAEAEVVSSPASPSSKPSVTVVLSTGVKAVVDGRKVLPRDTEA
DLGGVDDMTKLVYLHEPGVLCNLARRYTLNEIYTYTGRILIAVNPFAKLPHMYDMHMMEQ
YRGVQFGELSPHVFAIADAAYKAMVSENRSQSILVSGESGAGKTETTKLIMRYLTFVGGR
AAGDVRSVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDKSGKISGAAVRTYLL
ERSRVVQISESERNYHCFYQLCASGQDADKYKLAHPRNFNYVNQSHMYELQGVSDAEEYL
KTRRAMDIVGICFSDQEAIFRLVAAILHLGNIEFSPGKEFDSSVIKDEKCKFHLQTAADL
LMVDAGLLLSTLCYRTIKTPEGNIIKAVDSSAAVIGRDTLAKTVYARLFDWLVDNINKSI
GQDVESRSQIGVLDIYGFECFKYNSFEQLCINFANEKLQQHFNKHVFKMEQEEYKTEEIN
WSYIEFVDNQDILDLIEKKPIGIVSLLDEACMLGKSTHETFAMKLFQNLRAHPRLEKPKL
SKTDFALFHFAGKVIYQTDLFLEKNRDYVIAEHQNLLSSSKCSFISGLFASHQDDPSKSS
YKFSSVASRFKQQLQALMETLSSTEPHYVRCIKPNSLNCPQKFENGSVLQQLRSGGVLEA
IRISLAGYPTRRTYSEFINRFGLLVPEHMDERFDERSLTQRILKQLNLENFQLGRTKIFL
RAGQIAVLDSRRGEILDNASRIVQGHFRTFVARKKFLSTRKASISIQLYCRGCLARNVLE
AKRQIAAAVSVERYARRWLCRCAYLHLRSAALVIQSGIRYILAVQTLQHLKNAKASTVIQ
AWWRMQKLHNFHQQYRRATVLIQCCWRQKLAKRALRNLKHAAYEAGALREAKGKLEKSLE
DLTLRFTLERRQRLAVEESKALEISKLLKILDSVKLELEASNEENKNNCKKIASLQHQLE
LSSKDQEALRSSLSQIEEVKRENFSLKEKNAEMEQELLKAQKCSHDNMDKLHDVEKNYVH
LRDNLKNLEDKISNLEDENHLLRQKALNLSPRHSRTGSHQIGASPCSPRSYFESSPAKLA
PLPHNITEPRRSRMNSDRHEDYHDVLQRCIKDDMGFKKGKPVAACIIYKCLLHWGVFEAE
RTTIFDFIIHTINSILKTENENDILPYWLANTSALLCMLQRNLRSKGFIMAPSRSSSDTH
LSEKANETFRSPLKAFGQRTCMSHIDARYPAMLFKQQLTASLEKIFGLIRDNLKKEISPL
LSLCIQAPKLARGGSGRRASSPDVAVQQPISTHWDRIVKFLDSLMDRLHKNFVPSFFIRK
LVTQVFSFINVQLFNSMLLRRECCTFSNGEYVKSGLCVLEKWIVDAEEEHAGASWDELKF
IRQAVDFLIIPHKSKKTLEQIKRNICPALSVRQIYRICTMYWDDKYGTHSVSADVVAKMR
DMVSNDTQNPVSNSFLLDDDLSIPFTTEEIAEEVPDVDMSNIEMPSTLRHVHSAQFLMQH
LQSPYLSR
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgatcttccgccccggcaccgccgtgtgggtcgagcacccggacctcgcctgggccgag
gccgaggtcgtctcctcccccgcctccccgtcctcgaagccctcggtcacggtcgttcta
tccaccggcgtcaaggctgtggtggatggcaggaaggtcctgccgcgagacacggaggcc
gaccttgggggcgtcgacgacatgaccaagctcgtctaccttcacgagcctggggttctc
tgcaaccttgcgcgacgatacacgctcaacgagatctacacatacacagggcgcatcttg
atcgctgtaaatcctttcgcgaagctgcctcatatgtacgatatgcatatgatggagcag
tacagaggtgtgcagttcggtgaattgagtccgcatgtttttgccattgccgatgcagca
tacaaagctatggttagcgagaaccgcagccagtccatattagtcagtggagaaagcggt
gctgggaaaacggagaccaccaagctgattatgcgataccttacttttgttggggggcgt
gcagctggtgatgtccgctctgtggagcaacaagttctagaatcaaatccactgttggag
gcttttggtaatgcacggacagtgagaaatgataactccagtcgatttgggaaatttgtt
gaaattcaatttgacaaatcgggtaaaatatctggggctgcagttcgaacttatctcctg
gaacggtctcgtgttgtgcaaatatctgagtctgaaaggaattaccactgtttttatcaa
ctttgtgcatctgggcaggatgcagacaaatacaagcttgctcaccctaggaactttaac
tatgtgaatcaaagccatatgtatgaattacaaggggtcagtgatgcagaggaatattta
aaaacacgaagggcaatggacatcgttggtatatgtttttctgatcaggaagctatattc
cgacttgtggctgctatccttcatctagggaatattgaattttctcctggtaaagagttt
gattcatctgttattaaggatgaaaaatgcaaattccatctccagacagctgctgatttg
cttatggtcgatgcagggcttttactttcaactctgtgctatcgtacaattaaaactcct
gaaggaaacataatcaaggcagttgacagttctgcagctgtcattggtcgtgatactctt
gcaaagactgtttatgcacgactatttgattggctcgttgacaacattaataagtccatt
gggcaggacgtggagtcaaggtcacagattggggtcttggacatctatggttttgagtgt
ttcaaatataacagctttgagcagttgtgcatcaattttgctaatgaaaagctccaacag
cattttaataagcatgttttcaagatggagcaggaggaatataaaacagaagaaatcaat
tggagctacattgaatttgttgataaccaagatatattggatcttattgaaaagaaacca
ataggcatagtttcactattggatgaagcatgcatgcttggaaagtcaacacatgaaact
tttgcaatgaagttgtttcagaatttaagagcacatccaagactagaaaagccaaagctc
tcaaagacagattttgcgctatttcattttgctggaaaggtgatctaccaaactgattta
tttttagagaagaaccgggattatgttattgcagagcaccagaatcttttgtcttcttcg
aaatgctcatttatttctggcctctttgcttcgcatcaagatgatccatcaaaatcatct
tataagttctcttcagtagcttcacgatttaagcaacaactccaagcactaatggagaca
cttagctcaacggaacctcattatgtccgttgcataaagccaaattcgctcaattgtccg
cagaagtttgaaaatggcagtgtactacagcaactgcgtagcgggggtgtccttgaagcc
attaggataagtcttgctggttatcccacacggagaacatactctgaattcattaatcgc
tttgggcttcttgtgccagaacatatggatgaaaggtttgatgagagatcactgacacag
aggatcctaaagcaactaaacctcgagaactttcaacttggcagaacaaaaattttcctc
cgggctggccagattgctgttttggactccagacgtggtgagattctggacaatgcttcc
aggattgtgcagggtcactttcgaacctttgttgctcgcaagaaatttctttcaacgagg
aaagcttctatctccatccaattatattgccgagggtgtttagcacgaaatgtgcttgaa
gctaagagacagatagcagcagctgtttcggttgaaagatacgctcgaagatggttgtgt
cgttgtgcatatttgcatcttcgttctgctgctcttgtgatccagtctggcattcgctat
atcttagcagttcagaccttgcagcacttaaagaatgctaaagcatctactgttatacag
gcttggtggaggatgcagaagctccataatttccatcagcaataccgacgggcaacagtt
ctcatccagtgctgttggagacagaagcttgctaaaagggcattgcggaaccttaaacat
gctgcatatgaagctggagctttacgtgaagcaaaaggcaaactcgagaagagcttagaa
gatctcactttgcgattcaccttagagagaaggcaaaggcttgctgttgaagagtcgaag
gcattggagatatctaagcttctcaaaatcttggattctgtgaagttagaattagaggca
tcaaatgaagaaaataaaaacaattgcaagaaaattgcctcactccagcatcagttagag
ttatcatccaaggatcaagaagctctgcgtagcagtctttctcaaatagaagaagtgaag
agggagaatttttcactgaaggaaaagaatgctgaaatggaacaagagctattaaaagct
caaaaatgtagccatgataatatggacaagctgcacgatgtggaaaagaactacgtgcat
ctccgggataacttgaaaaacttggaggataagatctcaaatttagaagatgagaatcat
ttattgagacagaaggccttaaacttatctccaaggcacagccgaactgggagccatcag
attggggcttcaccatgcagcccaaggtcatactttgaatcttcacctgcaaagcttgca
cctctcccacataacattacagaaccaagaaggtcaaggatgaattctgatagacatgag
gattatcatgatgtgctccaacggtgcatcaaagatgatatgggattcaagaagggaaaa
ccagttgcagcctgtatcatttacaaatgccttctccattggggagtatttgaggctgaa
agaactactatttttgacttcataattcacacaattaatagcatcctgaagacagaaaat
gagaatgacattttgccctactggctggcaaatacgtctgcccttctatgcatgttacaa
agaaatttaaggtcaaaaggattcatcatggcaccctctcgatcgtcttcagatactcac
ttaagtgaaaaggcaaatgaaacattcaggtctcctttgaaagcctttggacaacggaca
tgcatgtcacacattgatgctcgatacccggccatgctatttaagcaacaacttactgct
tccttggagaagatctttggcttaattcgtgacaatctaaagaaagagatatcaccactt
ttaagcctttgcattcaggcaccaaaacttgctcgaggaggcagtggaaggagggcgagc
tcgcctgacgtggccgtgcagcaaccaataagtactcactgggatcggattgttaagttt
ttggactcattgatggatagactacataaaaattttgtgccttcttttttcatccgcaag
ctagtaactcaagttttctctttcattaatgtacagttgttcaatagtatgctcctacga
cgagaatgctgcacgttttcaaatggagaatatgtgaaatctgggctttgtgtacttgag
aaatggattgtggacgctgaagaagagcatgcaggtgcatcttgggatgagctgaagttc
atcaggcaagcggttgactttctgatcattccacataaaagcaaaaagacccttgagcag
attaagaggaatatttgcccggcattaagtgtgagacagatatatcgtatatgtacgatg
tactgggatgacaaatatggtacccatagtgtatctgctgatgttgttgccaaaatgagg
gacatggtgagcaatgacactcaaaatcctgtgtctaattcatttcttctagacgatgac
ttgagcattcctttcacaactgaggaaatagcagaggaagtaccagacgttgacatgtca
aacatcgaaatgccctcaacgcttcgtcatgttcactctgcccagttcttgatgcagcac
ctccagtcaccttacttgtcgcgatga
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integrated database retrieval system
