Setaria viridis (green foxtail): 117838172
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Entry
117838172 CDS
T07951
Name
(RefSeq) protein RRP6-like 1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117838172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117838172
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117838172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
117838172
NCBI-ProteinID:
XP_034573979
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Position
9:complement(53432571..53438887)
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AA seq
730 aa
AA seq
DB search
MDGPEGVKGREDAAPGREAGDPEEAGDGFQLVSHDKKKKRASGQEGGGSAGSGAFLGAGS
VRALTQDKGGAPAPGTKAKVPFHDPTIPRPQEVYKIIVDNYKPFEHVWLERSEDGTRCVH
PLEKLPVEQFVDRNVPESEPLKPADLEDTPFTLVEDHKGLMELAKKLKSVTEFAVDLEHN
QYRSFQGLTCLMQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQ
RDFHIYICNLFDTGQASRVLQMERNSLEYLLLRFCGVTAKKEYQNADWRSRPLPDEMIKY
AREDTHYLLYIYDLMKQRLQRESTPENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYG
LQEHELNSKQLAVVAALHGWRDRLARQEDESTGYVLPNKALIEIAKQMPTDTGHLKRIVK
SKYPFVERSLDEIAYTVWNALEYSYAFEGIAEQLKKERSEQLALKSVQASDETTLLDVDS
DKSNIGTADQSSVAPSSTANVSVASGSGAGFMNETAMIDSIHLDDNTRTTSTKNFKTLSG
LTRPINKDVLSNNRYQQATQELKRPTLGALGNSEPGRQTEIFGGFSKEQFQGGSNVENFR
SSVLPFQQFSDGVKHSAAIGPTESFYPNTGMHSDNVWIQSTQMNEAMQLSNATYYPQLPG
YSTEVVGNHYEPEGMQMSSYLSGFEPTFQSISQSTGTGLLPGRNKEGNFQNPMRRQSYPP
SSNRYDRPYQ
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggacgggcccgaaggcgtgaaggggagagaggacgcggcgccgggccgcgaggccggc
gaccccgaggaggcgggggacgggttccagctcgtctcgcatgacaagaagaagaagagg
gccagcggccaggagggtggcgggagtgctggctccggcgcctttctcggtgcggggtcg
gtgcgggcgttgacccaggacaagggaggcgcgcccgcgccggggacgaaggcgaaggtg
cccttccacgatccgaccatcccccggccgcaggaggtgtacaagatcatagtggataac
tacaaaccgttcgagcatgtctggctagagcgcagcgaggacggcacccggtgtgttcac
ccgctggaaaaactgcctgttgaacagtttgttgacagaaatgttcctgagagtgaacca
ttgaagccagctgatttagaggatacaccatttacgctggttgaggatcacaaaggcttg
atggaattagctaaaaagctgaagagtgtaactgagtttgctgtggatttggagcacaat
caatataggtcatttcaaggtttgacctgcttgatgcagatttcaaccagaacagaagac
tttattgtggacactcttaagcttcgcatatacattggtctctacttgcaagaacctttt
aaagatccaaccaagagaaaggtaatgcatggtgcggatcgtgatataatgtggctccaa
cgggatttccacatttacatatgcaatctttttgacacaggacaggcttcgagggtctta
cagatggagagaaacagcctagaatacctattgcttcgcttttgtggagtgacagcaaag
aaggaatatcaaaatgcagactggaggtcgaggccacttcctgatgaaatgatcaagtat
gctagagaagatacacactacctgctgtacatatacgacttaatgaaacagagactacaa
agggagtcgacacctgaaaatgatcttcttctagaggttcataagcgcagtaatgaaatt
tgcttacagttctatgaaaaggagctgctgacagatacatcctatctccacatatatggg
ttgcaggaacacgaactgaattcaaaacagctggctgttgttgctgctttgcatgggtgg
agagatcgtttagctcgtcaagaagatgagagcactggctatgtattgccaaataaggct
ttaattgagatagcaaagcagatgcctacagatactgggcatttaaaaagaatagtaaaa
tcgaaatatccatttgttgagcgcagtctcgacgaaattgcttacactgtttggaatgcg
cttgaatattcttatgcatttgaaggaatagctgagcaactaaagaaggaacggtcagaa
cagttggcactgaaaagtgttcaggccagtgatgaaacaactcttttggatgttgacagt
gataagagtaatattggtacagccgatcagtcttctgtggctccttcatcaactgcaaat
gtcagtgttgcttctggcagtggggctggttttatgaatgaaacagccatgatcgacagc
atccacctagacgacaatactcgaaccacatcaactaagaacttcaagaccttgtcaggc
cttaccagaccaattaataaggatgtcctgagcaataatagatatcagcaggctactcaa
gaactgaagagacccactttaggagctttaggaaattcagaacctggaagacagacagaa
atttttggagggttttctaaggagcagtttcagggtgggagcaatgtggagaactttaga
tcttctgtccttcctttccagcagttctctgatggggtgaaacattcagctgctattggc
cccacggaatcattttatccaaatactggaatgcacagtgacaatgtttggattcaatca
actcagatgaatgaagcgatgcagctgagcaacgctacttactacccacagcttccagga
tatagcactgaagttgtagggaaccattatgaacctgaaggcatgcagatgtccagctac
ctgtctggttttgagcccacctttcaatcaataagccaaagtacaggaacaggactactt
cctggtagaaataaggaaggaaatttccagaatccgatgagacggcaatcttacccgcct
tctagtaacagatatgatagaccataccagtag
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