Setaria viridis (green foxtail): 117838174
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Entry
117838174 CDS
T07951
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03013
Nucleocytoplasmic transport
svs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117838174
03015 mRNA surveillance pathway
117838174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117838174
Enzymes [BR:
svs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117838174
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117838174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
117838174
NCBI-ProteinID:
XP_034573980
LinkDB
All DBs
Position
9:complement(53423418..53428014)
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AA seq
498 aa
AA seq
DB search
MADKASPEKKSWADVEEEEEAKVKAEAAAAAAASSSSSTSEPAVEAQAKQIEALSLAPPE
DDAAGEEAPPLLDDSDDAQIQAVTSGGTVYESATTFEDLKLSPELLKGLHDEMGFSRPSK
IQAITLPMILTPPYKDLVAQAHNGSGKTTCFVLGMLSRVDPNRRIPQAICICPTRELAQQ
NKAVLMRMGKFTGITCACAIPPAQKDYVPVSKMPPINDQIVIGTSGTLIKWITNKKVATR
EIKILVFDEADHMLAEDGFRSDSERIMRDIQRSAGGCQVLLFSATFNERVKDFVTRVIKD
GNQIFVKKEELTLEKVKQYKVQVPDEAAKIEVIRDKIFEFGQKVGQVIIFVRTKQSTKNV
HNALTREDYVCSSIQGSLDQAEREKIIQEFKDGYTKVLISTDVLARGFDQAQVNLVINYD
MPIKFGTRDEPDYEVYLHRIGRAGRFGRKGAVFNMLCGETDNVVMKKIENYFQHQVPEVR
NWKNEEDFETALKDAGLL
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaggcgtctccggagaagaagtcgtgggccgacgtcgaggaagaggaggag
gccaaggtaaaggcggaggctgccgcggcggcggcggcgtcctcgtcctcctccacctcc
gagccggcggtggaggcgcaggccaagcagatcgaggcgctctccctcgccccgccggag
gacgacgccgccggcgaagaggccccgcctctacttgatgactctgacgatgcgcaaatc
caagccgtgacttcgggcggcacggtgtatgagtcggccaccacgttcgaggatctgaag
ctgtcgcccgagctgctcaaggggctgcacgacgaaatgggtttcagccgcccgagcaag
atccaggcgatcaccctccccatgatcctcacgccgccttacaaggacctcgttgcgcag
gcgcacaacggctccggcaagaccacctgcttcgtccttggcatgctcagccgcgtggat
cccaaccgcaggatcccccaggccatctgcatttgcccaactagggagctcgcccagcag
aataaggcggttctcatgaggatgggcaagtttactggcattacatgtgcatgtgcgatc
ccaccagctcaaaaagattatgtgccagtctccaagatgccaccaattaatgaccagatt
gtgatcggcacatctgggacactcatcaagtggattaccaataagaaggtggccacaagg
gaaatcaaaatacttgtgtttgatgaggcggatcatatgcttgctgaggatggctttagg
agtgattctgaaaggatcatgagggatatacaaagaagcgctggtggttgtcaggtgctt
ctcttttctgcaaccttcaatgagagagtgaaagattttgtaacaagggtcattaaggat
ggaaatcaaatattcgttaagaaggaagagcttactttggaaaaagtgaagcaatacaaa
gttcaagtccctgatgaggcggcaaaaatagaggttataagggacaagatctttgagttt
ggacaaaaagttggccaggttatcatatttgttagaacaaagcaaagtactaagaatgtt
cacaatgctttgacaagagaggactatgtgtgctcctcaattcaaggatcccttgaccaa
gcagagagggaaaagataatacaggaattcaaagatgggtacactaaggttcttatatca
actgatgttcttgctcgtggttttgaccaagcacaggtcaacctggttatcaactatgac
atgccaatcaaatttgggacaagagatgagcctgattatgaggtgtacttacacagaatt
ggcagagctgggcgcttcggccggaaaggtgctgtgttcaacatgctatgtggtgaaaca
gataatgttgtgatgaagaagattgagaactacttccagcaccaagtacctgaggtgcga
aattggaaaaatgaggaagattttgagactgcactcaaggatgcaggtttactatga
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