Setaria viridis (green foxtail): 117838181
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Entry
117838181 CDS
T07951
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b
KO
K11088
small nuclear ribonucleoprotein D3
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117838181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svs03019
]
117838181
03041 Spliceosome [BR:
svs03041
]
117838181
03032 DNA replication proteins [BR:
svs03032
]
117838181
Messenger RNA biogenesis [BR:
svs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
117838181
Spliceosome [BR:
svs03041
]
Complex A
U1 snRNP components
Sm proteins
117838181
U2 snRNP components
117838181
Complex B
U1 snRNP components
117838181
U4/U6.U5 tri-snRNP components
117838181
Complex C
U2 snRNP components
117838181
DNA replication proteins [BR:
svs03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
117838181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF6897
Motif
Other DBs
NCBI-GeneID:
117838181
NCBI-ProteinID:
XP_034573994
LinkDB
All DBs
Position
9:complement(49202039..49205213)
Genome browser
AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQL
EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAVGVGRGRAVAMRARAAAGRGGG
PVGRGGAPPVRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagtctgggaatcccggtgaagctgctccacgaggcggcggggcacgtggtg
acggtggagctcaagaccggtgaggtgtaccgggggtccatggtcgagtgcgaggacaac
tggaactgccagctcgagaacatcaccttcaccgccaaggatgggaaggtgtcgcagctg
gagcacgtcttcatcagaggaagcagagtaagatttatgattataccagacatgctcaag
aacgctcctatgttcaagcgtttggaagcgaggattaggggcaaaggatcagctgttgga
gttggccgtggtcgtgcggtcgcaatgcgtgctcgggctgctgctggccgtggtggtggt
ccagtcgggcgaggtggtgcacctccggtgaggaggtag
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