Setaria viridis (green foxtail): 117838336
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Entry
117838336 CDS
T07951
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04120
Ubiquitin mediated proteolysis
svs04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117838336
04120 Ubiquitin mediated proteolysis
117838336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117838336
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117838336
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
U-box type E3
117838336
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
117838336
NCBI-ProteinID:
XP_034574218
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All DBs
Position
9:complement(40492802..40500332)
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AA seq
1029 aa
AA seq
DB search
MASPSPASARPQRSPDEVEDIILRKILLVALTPPANPSPAVAYLELTAAELLSESRPLLA
LRDAAERLLIDRLSLPDLPAASPPPFNFLAAAFGRAADEARKISTIRDAGLRARLAASIA
HLRGLILSYARIVAGNPDTFPTPPGAPHPAAELLVFLLAEAADPLDPTPAPGAPPPPGFI
DEFFGGADYESIEPAMGELYERLRQSVEKVSALGDFQRPLRVLRRLVGIPNCAKALVNHP
KWIPKNQIMLIGEGRVMELSSVLGAFLHVSAIRDREFASKPDVGQQCFSEASSRRPADLL
SSFTTIKSVMNGLYDGLKDVLLILLKNLDTREKVLEYIAEVINKNASRSGMQVDPLKCAS
SGMFVNLSAVMLRLCEPFLDNMESKKDKIDVNYLFCNNRIDFKDLTAINASSDEVSSWIE
SVNSECDQNNSSGEARFVESQEATSSGKNSTALVRCSKKENFSFICECFFMTARVLNLGL
MKAISDFKHISQQLSRFEDDLESNRAMRDQGGGSPQLEQDINRLEKIVEILTQDKFCYEA
QILRDGAFLQRALSFYRLMILWSVDLVGGFKMPLPSQCPKEFSCIPEHFLDDAMDLLVLT
SRIPKALESFVLDDFLSFIIMFMGSTSYIKNPYLRAKMVEVLNCWMPQRSGLSSTASLFE
GHQLCLDYLVRNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHRNAWRQIA
KEEEKGVYLNFLNFLINDSIYLLDESLNKILELKEIEAEMANTVEWDRRPAQEREERLRV
FHQWENIVRFDMKLANEDVGMLAFTSEQIPAPFLLPEMVERVASMLNYFLLQLAGPQRKS
LTVKDPEKYEFKPKQLLKQIATIYVHISRGDKEAVFPAAISKDGRAYNDQLFASAANILW
RIGGDPQIINEFMQLAGKAKAAASEAMDAEAILGDIPDEFLDPIQYTLMKDPVILPSSKV
TIDRPVIIRHLLSDSTDPFNRSHLTQDMLIPNTELKLQIEEFVRSQQSRKRTAAESEIGE
ADGAADMVE
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccgtcgccggcttcggcgcggccgcagcgctcgcccgacgaggtggaggac
atcatcctccgcaagatcctgctcgttgccctcacgcccccggccaaccccagccccgcc
gtcgcctacctcgagctcaccgccgccgagctcctctccgagtcgcgcccgctcctcgcc
ctgcgcgacgccgccgagcgccttctcatcgaccgcctctcgctgccggacctgcccgcc
gcctccccgccccccttcaacttcctcgccgccgccttcggccgcgccgccgacgaggcc
cgcaagatctccaccatccgcgacgccgggctccgggcgaggctcgcggcctccatcgcg
cacctccggggcctcatcctctcctacgcgcgcatcgtcgccgggaaccccgacaccttc
cccacgccgccaggcgcgccccaccccgccgccgagctcctcgtcttcctactcgccgag
gccgccgacccgctcgaccccaccccggcgcccggcgccccgccgcccccgggcttcatc
gacgagttcttcggcggtgcggactacgagtccatcgagccggccatgggggagctgtac
gagcgcctcaggcagagcgttgagaaggtctcggcgctcggcgatttccagcgcccgctg
cgggtgcttaggcgcctcgtggggatccccaactgcgccaaggctctggtgaaccatccc
aagtggatacccaaaaatcagatcatgctcatcggggaaggaagggttatggagctctcc
agcgtgcttggggccttcttgcacgttagcgccatccgtgaccgagagtttgccagcaag
cccgacgtcgggcaacagtgtttctcggaggcatcttcacggcggccagctgatttgttg
tcatctttcacaacaatcaagagtgttatgaatggcttgtatgacggccttaaggatgtt
cttctaatcctcctaaaaaatttggatactcgagaaaaggttcttgagtatatagcagaa
gtgataaataaaaatgcatccagatctggcatgcaggtagaccctttaaaatgtgcgagt
tcaggtatgtttgtgaatcttagtgctgtgatgctccgcctatgtgaaccttttttggat
aacatggagtcaaagaaggacaaaattgatgtcaattacctcttctgcaacaatagaatt
gatttcaaagatttgacagctataaatgcttcatcagatgaagtctcatcttggatagag
agtgtaaacagtgagtgtgatcaaaataattccagtggagaggctcgttttgtggaatca
caggaagccacaagctctggcaaaaatagcacagctttagttaggtgctcaaagaaggag
aatttctcatttatttgcgaatgtttcttcatgactgcaagggtacttaatctggggttg
atgaaagctatatcggactttaaacatatttctcagcaactttcaaggtttgaagatgac
ttggaatcaaatagagcaatgagagatcaaggagggggctcaccgcagctggagcaagat
ataaatcgcctggagaagatcgtcgagattctaacacaggacaaattttgttatgaagct
cagatactacgagatggtgcattccttcaacgtgcattatctttctacagattgatgata
ctgtggtcagtagacctagttggcggattcaagatgcctttgccatcacaatgccccaag
gaattttcttgcattccagagcattttcttgatgatgcaatggatttacttgttctgacc
tctagaattccaaaagcgttggaaagctttgtattggatgactttctcagtttcatcatt
atgtttatgggaagcacatcttacattaagaatccttacctaagagcaaagatggttgaa
gttttgaattgctggatgccacaaagaagtggcttgagttctacagcctcgctatttgag
gggcaccaactatgtcttgattaccttgtcagaaatcttctaaagctttatgtggatatt
gagttcactggctcccatacgcaattttttgacaagtttaacattcgacataatattgcc
gagcttttggagtacttatgggatgttcccagtcatcggaatgcatggagacaaatagct
aaagaggaggagaagggtgtatacttaaattttctgaacttccttatcaatgatagcatc
tatcttcttgatgagagcttgaacaaaattctcgaactgaaagaaatagaggctgaaatg
gctaacaccgttgagtgggaccgcaggcctgctcaagaaagagaggagcggctgcgtgtt
tttcatcagtgggagaatattgttcgctttgacatgaaactggccaatgaggatgtaggg
atgcttgcgttcacttcagaacaaattccagcacctttccttctccctgaaatggtcgaa
agggttgcgagcatgcttaattacttcctcttgcaacttgctggtccccagaggaaatct
ttgactgtaaaggatccagagaagtatgagttcaagccgaagcagctattgaaacagatt
gccaccatctatgtccatatctcaaggggggataaggaagctgtcttcccagctgcaatc
tcaaaagatggtagagcatacaatgaccagttgtttgctagcgcagctaatattctgtgg
aggattggaggtgatccccaaattataaatgagtttatgcaacttgctggtaaggcaaaa
gctgctgcttctgaggctatggatgctgaggccatccttggggacataccagatgaattt
ctcgatccgattcagtatactctgatgaaagatcctgtgatactgccatcatcaaaggtc
acaatagatcggcccgttattatcaggcatctgctgagtgattctacggatccatttaac
cgatcccacctcactcaagacatgctgataccaaatacagagctgaagttgcagatcgaa
gagtttgtccggtcccagcagtcgagaaagcgaacagctgctgaatcggagattggcgaa
gcggatggcgctgctgatatggttgaatga
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integrated database retrieval system
