Setaria viridis (green foxtail): 117838351
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Entry
117838351 CDS
T07951
Name
(RefSeq) U-box domain-containing protein 13
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
svs
Setaria viridis (green foxtail)
Pathway
svs04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
svs00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
117838351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
svs04121
]
117838351
Enzymes [BR:
svs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117838351
Ubiquitin system [BR:
svs04121
]
Ubiquitin ligases (E3)
U-box type E3
117838351
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Arm
PUB10_N
ARM_PUB
U-box
ARM_ARMC5
KAP
Arm_2
Neurochondrin
MLKL_N
HEAT_2
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_2
zf-Nse
ArlS_N
TPR_CUL9
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
117838351
NCBI-ProteinID:
XP_034574241
LinkDB
All DBs
Position
9:complement(47628886..47634105)
Genome browser
AA seq
720 aa
AA seq
DB search
MDEEAKAGPKSDTNTNAAAAAEAAAASPLPPSSSEAAEREAKVEGAEVEEGEVVERLVEL
VGEIAAISDFRNSYRRQFCNLSRRIRLLVPMLEEAKEAPTPLPVASEAALRRLREALYGA
GELLRLGSSGSKIFLVLEREKIMKTFQDITERLEQALAGISFDELNISDEVREQVELVHA
QFKRAKERSDSSDDDLFNDLMSVYNSSSSANVDPDILRRLSEKLQLVTIYDLNQESLTLH
EMASGGDPGAIVEKMSMLLKRIKDFVQTQDPEMGAQASTTDISPKDNSACPAIPDDFRCP
ISLDLMKDPVIVATGQTYERGCIERWLEAGHDTCPKTQQKLPNKSLTPNYVLRSLITQWC
EANGIEPPKRSAQLSNAPKPCTAAEHNNVVELLQKLSSQNLEDQRGAAGMLRQLAKRSAE
NRACIGDAGAIPILVSLLSTTDVSTQEHVVTALLNLSIYEENKARIITSGAVPGIVHVLK
RGSMEARENSAATLFSLSIVDENKVTIGASGAIPALVQLLSNGSQRGKKDAATALFNLCI
YQGNKGKAVRAGLVPILLELLTETESGMVDEALAILAILSGHPEGKAAIGAASAIPVLVG
VIRNGSARNKENAAAVMVHLCNGEQQQQHLAEAQEQGIVSLLEELAESGTDRGKRKAIQL
LERMNRFLKQQSQAQAQAEAMAQVHAQAQAQALALVEAQAQADMQAERSLLPTSSSHIPD
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggaagcgaaggccggccctaaatccgacacaaacaccaacgctgccgctgcg
gccgaggcggcggcagcctctccgctgccgccctcgagctcggaggcggcggagagggag
gcgaaggtggagggggcggaggtggaggagggggaggtggtggagcggttggtcgagctg
gtgggcgagatcgcggcaatctccgacttcaggaactcgtaccggcggcagttctgcaac
ctgtcgcggcggatccggctgctcgtgcccatgctggaggaggccaaggaggcgcccacg
ccgctgcctgtggcatcggaggccgctctccgccgtctcagggaggctctctacggcgcc
ggggagctgctccggctcggcagcagcggcagcaagatcttcctggttcttgagagagag
aaaataatgaagactttccaggacattacagaaagacttgaacaagccttagctggtatc
tcatttgatgagcttaacatatcagatgaagtaagagagcaggttgaattggtgcatgct
cagttcaaaagagctaaggaacgatcggattcatccgatgacgatctttttaatgatctg
atgtccgtctataattcaagtagcagtgctaatgttgaccctgatattcttcgaaggtta
tctgagaagttgcagcttgtcacaatatatgacctcaatcaagaatctcttaccttgcat
gagatggctagtggcggtgatcctggtgcaattgttgaaaagatgtcgatgctcctgaag
aggatcaaggattttgtgcagactcaagaccctgaaatgggtgctcaagcaagtacaaca
gacatttccccaaaagacaactcagcatgtcctgctattcctgatgatttccgttgtcca
atatcactggatttaatgaaagacccagttattgtcgccactgggcagacttatgagcga
gggtgcatagagaggtggctggaggctggacatgacacctgtccgaagacacagcagaag
cttccgaataaatccctgactccaaattatgtccttcgcagcctcataactcaatggtgt
gaggcgaatggtatcgagccgccaaaacgctctgctcaacttagtaatgcaccaaagcca
tgtactgctgctgagcataacaatgttgttgagcttcttcagaaactctcatcccaaaac
cttgaagatcagcggggtgctgctggtatgcttcgtcagcttgccaagcgtagtgctgaa
aatcgtgcttgtattggagatgctggtgctattcctattcttgttagcctgctatcaacc
actgatgttagcacccaggagcatgtggttactgccctcttgaatctatccatctacgaa
gagaacaaggcaagaataatcacctctggagctgttcctggaattgtgcatgtattaaag
aggggcagcatggaggctcgggaaaattcagctgccacgctgttcagcctctcaattgta
gatgagaacaaggtgactattggggcttctggggcaattcctgcgcttgtacagctattg
agtaatggaagtcaacggggtaaaaaggatgcagcaacagcactatttaacctgtgcatt
tatcagggcaacaagggcaaagctgttagagctggattggttcctatactactagaacta
ctcacagagactgaaagtgggatggtagatgaggcccttgcaatattggcaatcctctct
ggacatcctgagggaaaagcagctattggtgctgcttctgcaatacctgttcttgttgga
gttatcagaaatggatccgcaaggaacaaggaaaatgcagctgctgtaatggtgcatctc
tgcaatggcgaacagcagcaacagcatcttgctgaagcgcaggagcagggtattgtgtct
ttgctggaggagctagcagaaagtggcacagacagaggaaagaggaaagcaatccagctg
cttgaacgaatgaatcggttcctaaagcagcagagtcaagcccaagcccaagcagaggcc
atggcgcaggttcatgcgcaggcacaagcacaggctctggctcttgttgaagctcaagcg
caggcagatatgcaagcagagcgatcactgcttcccacatcatcatcacatattcctgat
tga
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